Factsheet for TraesCS4D01G296900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
mitochondrion 2
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G298100.1	Wheat	mitochondrion, plasma membrane	86.8	99.09
TraesCS4A01G006900.1	Wheat	peroxisome	97.93	98.26
HORVU4Hr1G077060.1	Barley	mitochondrion, peroxisome, plastid	86.2	92.95
Os03t0181750-00	Rice	plasma membrane	52.4	81.45
Zm00001d004442_P001	Maize	plastid	79.67	78.77
KXG25805	Sorghum	peroxisome, plastid	80.33	77.84
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	27.2	69.98
Bra032855.1-P	Field mustard	cytosol	4.67	59.32
PGSC0003DMT400058977	Potato	plastid	57.07	56.06
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	58.47	55.61
KRH06234	Soybean	peroxisome, plastid	55.73	55.18
TraesCS6D01G107600.1	Wheat	cytosol, plasma membrane, vacuole	25.07	41.36
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	33.8	40.14
TraesCS2D01G523100.2	Wheat	cytosol	33.73	39.81
TraesCS7D01G068400.1	Wheat	plasma membrane	32.53	39.61
TraesCS6D01G250000.1	Wheat	golgi	33.0	39.25
TraesCS3D01G258100.1	Wheat	plasma membrane	32.27	38.72
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	32.93	38.71
TraesCS3D01G257500.1	Wheat	plasma membrane	32.4	38.69
TraesCS3D01G257900.1	Wheat	peroxisome	32.4	38.51
TraesCS7D01G284100.1	Wheat	cytosol	35.27	38.47
TraesCS2D01G010400.1	Wheat	plasma membrane	31.67	37.91
TraesCS3D01G258300.1	Wheat	cytosol, peroxisome, plasma membrane	31.73	37.63
TraesCS2D01G010500.1	Wheat	plasma membrane	31.53	37.6
TraesCS1D01G374300.1	Wheat	cytosol, peroxisome, plasma membrane	31.6	37.35
TraesCS2D01G339000.1	Wheat	plasma membrane	31.33	37.21
TraesCS3D01G258200.2	Wheat	peroxisome	31.07	37.01
TraesCS3D01G362700.1	Wheat	cytosol, peroxisome, plasma membrane	30.73	36.04
TraesCS6D01G131900.1	Wheat	plasma membrane	29.2	34.9
TraesCS7D01G298600.1	Wheat	peroxisome	29.0	34.58
TraesCS7D01G298400.1	Wheat	peroxisome	29.07	34.49
TraesCS3D01G541700.1	Wheat	cytosol, plasma membrane, vacuole	28.93	30.85
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	28.93	30.8

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF235	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G296900	EnsemblPlants:TraesCS4D01G296900.1	TIGR:cd03249	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:466016024..466021278

Molecular Weight (calculated)

160908.0 Da

IEP (calculated)

9.060

GRAVY (calculated)

0.016

Length

1500 amino acids

Sequence
(BLAST)

0001: MADFSFSRSG PQPQGQGRRR QGARSPYPTP DNSTSFAGGR APRGQRRRGG AYDDMSWQSS VSWQPDTSWA QPHGLGAAVG PWGLAGSDAA SRRGPALFQR
0101: TARDYYLSRR SGPRMHRDRS SSMSTVHRPS GVVSTVAGKR LELQSVVTDA SRAAAVAPDV SFASNDDCSI AASVAPAAGA VDRAMVRYGA GAGAGARTPV
0201: SRDVSFSRDN HNKLYVTPAP VQRDVPSFGY DVSATSYSQS RSRYYGDDDA GGYEFDDEEE DDGEVELRAG KPVSVTGLFK YSTPMDIVLL VLGCIGAMIN
0301: GGSLPWYSYL FGNFVNKIVA SDKDQMMKDV RQISVYMVIL AVVVVVGAYL EIMCWRIVGE RSALRVRREY LKAVLRQEIG FFDTEVSTGE VMQSISSDVA
0401: QIQEVMGEKM AGFVHHVFTF IFGYVVGFRT SWRIALAVLA VTPVMMACGI AYKAIYGGLA ANEEASYQPA GSVAQQAISS IRTVLSFVME DRLADRYAEW
0501: LRKASPIGVK MGFAKGAGMG MIYLVTYSQW ALALWYGAKL VAQGEIKGGD AIACFFGVMV GGRGLALSLS YSAQFAQGTA AAGRVFEIID REPEIDPYGA
0601: GGRALSAVRG RMEFKDVEFA YPSRPESLIL YNLNLIVPAA KMLALVGISG GGKSTVFALI ERFYDPTRGT ITLDGQDLGS LNLKWLRSQI GLVGQEPILF
0701: AVSIIENVMM GKENATRQEA IAACTKANAH TFVLGLPDGY DTQVGDRGTQ LSGGQKQRIA LARAIIREPR ILLLDEPTSA LDAESEAVVQ QSIDRLSVGR
0801: TVLVIAHRLA TVRNADTIAV LDRGAVVESG RHADLMARGG PYAGLVKLAS DSGRSDPAVA PGTPGTPGAA GYNSFTDNSG YDVSVSKSRY GGIRAIQEEE
0901: ADAKDARGGK GAAKFSVSEI WELQRQEGPL LILGFLMGIN AGAVFSVFPL LLGQAVQVYF DPDTDKMRRQ IGYLALAVVG LGFACILTMT GQQGFCGWAG
1001: ARLTMRVRDR LFRAIMRQEP AWFDEEDNAM GVLVTRLARD AIAFRSMFGD RYAVLLMAVG SAGVGLGICF GLDWRLTLIA MACTPLTLGA SYLNLLINVG
1101: ARSDEAAYAR ASSIAAGAVS NVRTVAALCA QGGIVGTFNR ALDGPSAKAQ RKSQYMGIIL GLSQGAMYGA YTVTLWAGAY FITKGWSTFG DVSKIFLILV
1201: LSSFSVGQLA GLAPDTSGAP TAIAGILSIL KRRPTINEEG TKRRTIKDGK PMDVELRKVI FAYPSRPDVT VLNDFSLRVK FGSTVAVVGP SGSGKSTVVW
1301: LVQRFYDPLG GTVTVGGMDV RELDLKWLRG ECAMVGQEPA LFSGSIRENI GFGNPKAAWA EIENAAKEAN IHKFIAGLPQ GYDTQVGESG VQLSGGQKQR
1401: IAIARAVLKQ SRILLLDEAS SALDLESEKH VQEALRRVSR RATTITVAHR LSTIRDADRI AVVSAGRTVE FGSHETLLAN HRDGLYAAMV KAEIEAQAFA

Best Arabidopsis Sequence Match ( AT1G02520.2 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.