Factsheet for Bra035648.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005403.1-P
Bra009166.1-P
Bra010996.1-P
Bra012474.1-P
Bra017216.1-P
Bra021925.1-P
Bra023087.1-P
Bra024741.1-P
Bra025359.1-P
Bra027824.1-P
Bra035030.1-P
Bra039042.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	Bra010996.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra012474.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra024741.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra035030.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra039992.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra027824.1-P	AT1G59980.1	18047472
AT5G57090.1	Bra005403.1-P	AT2G34650.1	17889649
AT5G57090.1	Bra021925.1-P	AT2G34650.1	17889649
AT5G57090.1	Bra017216.1-P	AT2G36910.1	17237354
AT5G57090.1	Bra023087.1-P	AT2G36910.1	17237354
AT5G57090.1	Bra025359.1-P	AT3G28860.1	17237354
AT5G57090.1	Bra039042.1-P	AT3G28860.1	17237354
AT5G57090.1	Bra009166.1-P	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20694	Canola	plasma membrane	95.61	99.53
Bra006834.1-P	Field mustard	plasma membrane	91.07	93.77
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	91.68	93.66
KRH02749	Soybean	plasma membrane	75.95	78.81
KRH19119	Soybean	endoplasmic reticulum	76.1	78.35
Bra002763.1-P	Field mustard	plasma membrane	70.2	77.98
VIT_11s0052g00440.t01	Wine grape	plasma membrane	72.47	76.03
GSMUA_Achr1P15720_001	Banana	plasma membrane	57.94	74.66
Solyc07g006900.1.1	Tomato	plasma membrane	71.26	74.64
PGSC0003DMT400048251	Potato	plasma membrane	71.26	74.64
EER88769	Sorghum	plasma membrane	63.69	67.25
Os06t0660200-01	Rice	plasma membrane	63.54	66.67
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	63.69	66.61
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	63.69	66.61
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	63.69	66.51
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	63.69	66.4
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	63.39	65.88
Bra012358.1-P	Field mustard	golgi, plasma membrane	55.37	60.7
Bra008105.1-P	Field mustard	golgi, plasma membrane	55.82	59.9
Bra015983.1-P	Field mustard	plasma membrane	55.82	59.71
Bra016366.1-P	Field mustard	golgi, plasma membrane	50.38	57.02
Bra003938.1-P	Field mustard	golgi, plasma membrane	45.84	55.49
Bra016173.1-P	Field mustard	plasma membrane	50.23	52.53
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	25.87	49.14
Bra015694.1-P	Field mustard	plasma membrane	42.21	48.61
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	24.51	47.51
Bra026669.1-P	Field mustard	golgi, plasma membrane	54.46	45.17
Bra023503.1-P	Field mustard	golgi, plasma membrane	21.33	23.62

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra035648	EnsemblPlants:Bra035648.1	EnsemblPlants:Bra035648.1-P
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0010315	GO:GO:0010329
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4F3J8	InterPro:Mem_trans	PFAM:PF03547
InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI00025460BC
SEG:seg	:	:	:	:	:

Description

AT5G57090 (E=2e-269) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter

Coordinates

chrA02:-:6964362..6968105

Molecular Weight (calculated)

70922.7 Da

IEP (calculated)

9.653

GRAVY (calculated)

0.080

Length

661 amino acids

Sequence
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MMLAYGSVRW WGIFTPSQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ ANVDVYYGDY
101: FQAFSRRGSL EWMITLFSLS TLPNTLVMGI PLLRAMYGDF SGNLMVQVVV LQSIIWYTLM LFMFEFRGAK LLISEQFPET AGSITSFRVD SDVVSLNGRE
201: PLQTDAEIGD DGKLHVVVRR SSAASSMISS FNKSHGGGLN SSMITPRASN LTGVEIYSVQ SSRGPTPRAS SFNQTDFYAM FNASKAPSPR HGYTNSYGGA
301: GSGPGGDVYS LQSSKGVTPR TSNFDEEVLK AKKGARGGKN ISGELYNNNN VPSYPPPNPM FTGSTSGASG VKKKESGGGG GGGGGGQNKE MNMFVWSSSA
401: SPVSEANARN AMTRGASVDL STDPKASLPP QENLAYKAMH SLIENMTPGR KGHVEMDQDG NNEGKSGVNS SPYNGKKGSD VEDGGPGGPR KQQMPPASVM
501: TRLILIMVWR KLIRNPNTYS SLFGLAWSLV SYKWNIKMPT IVSGSIAILS DAGLGMAMFS LGLFMALQPK IIACGKSVAV FAMAVRFLTG PAVIAATSIA
601: IGLRGNLLHI AIVQAALPQG IVPFVFAKEY NVHPDILSTA VIFGMLVALP VTVLYYVLLG I

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.