Factsheet for VIT_19s0085g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0066g02320.t01	Wine grape	peroxisome	72.49	76.75
AT3G28345.1	Thale cress	plasma membrane	68.16	67.34
CDX86445	Canola	plasma membrane	67.92	66.88
Bra025326.1-P	Field mustard	plasma membrane	67.84	66.8
CDX85192	Canola	plasma membrane	67.84	65.48
CDY04018	Canola	plasma membrane	66.12	65.27
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	65.63	64.68
Os02t0190300-01	Rice	plasma membrane	65.63	64.58
TraesCS4A01G370600.1	Wheat	plasma membrane	64.65	64.29
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	64.82	64.24
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	55.67	63.8
TraesCS7D01G068400.1	Wheat	plasma membrane	63.76	63.39
AT3G28390.1	Thale cress	plasma membrane	62.86	62.86
Os02t0190000-00	Rice	plasma membrane	63.51	62.59
AT3G28360.1	Thale cress	plasma membrane	62.69	62.54
Bra025331.1-P	Field mustard	plasma membrane	57.39	61.72
Os02t0189800-00	Rice	mitochondrion	37.14	60.83
EES05229	Sorghum	plasma membrane	60.08	59.16
Zm00001d016794_P001	Maize	plasma membrane	59.67	58.2
VIT_01s0137g00350.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	53.88	52.72
VIT_17s0000g09760.t01	Wine grape	plasma membrane	50.53	51.71
VIT_11s0016g03160.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	50.29	50.29
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	44.24	43.36
VIT_18s0001g14660.t01	Wine grape	peroxisome, plasma membrane, vacuole	42.04	42.21
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	18.69	42.02
VIT_10s0003g02570.t01	Wine grape	plasma membrane	41.55	41.08
VIT_10s0003g02540.t01	Wine grape	plasma membrane	41.14	40.94
VIT_02s0012g01660.t01	Wine grape	plasma membrane	41.06	40.47
VIT_10s0003g02580.t01	Wine grape	plasma membrane	40.9	39.6
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	43.59	39.44
VIT_05s0020g00890.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.31	39.1
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.14	38.86
VIT_16s0098g00570.t01	Wine grape	cytosol, plasma membrane, vacuole	37.22	38.38
GSMUA_Achr1P18340_001	Banana	plasma membrane	59.1	34.61
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	36.33	34.23
VIT_06s0004g04100.t01	Wine grape	cytosol	36.98	32.24
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	38.29	29.74

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100259876	wikigene:100259876	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB49023	ProteinID:CCB49023.1
UniProt:F6H9X9	EMBL:FN595503	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	EntrezGene:LOC100259876	wikigene:LOC100259876	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF381
SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0001985B98	ArrayExpress:VIT_19s0085g00060
EnsemblPlantsGene:VIT_19s0085g00060	EnsemblPlants:VIT_19s0085g00060.t01	RefSeq:XP_002264708	RefSeq:XP_002264708.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:-:22379272..22383673

Molecular Weight (calculated)

133413.0 Da

IEP (calculated)

7.449

GRAVY (calculated)

0.169

Length

1225 amino acids

Sequence
(BLAST)

0001: MGRNIGSVRS IFMHADTADY CLMAFGLLGA ICAGLYRPTL LFVVNKIMNN IGSASTSGDA FSHKINQNAL ILLYIACGSW VPFFLEGYCW SRTAERQATR
0101: MRSRYMKALL RQDVEYFDLH VTGTAEAISS VSEDSLVIQD VISEKVPNLL INAASFVGCY IVAFAMLWRL AIVGVPFVVL LVIPGFIYGR ALMNLARKMK
0201: EEYSKAATIA EQAISSIRTV YSFVGERKTQ SAFSAALQGP FKLGLRQGVA KGLAIGGNGV VLGIWAFMCW YGSRLVMYHG AQGGTVFATG AVMAIGGLSL
0301: GPGLSNLQYL SEACTAGERI MEVIKRVPKI DSDNMEGQTL ENLCGEVEFK HVQFAYPSSP EITIFKDFSL KIPTGKKVAL VGSSGSGKST AVALLQRFYD
0401: PLGGEILLDG VAIDKLQLKW LRSQMGLVSQ EPSLFATTIE ENILFGKEDA TMEEVVAAAE AAHAHHFICE LPDGYDTQVG ERGVQMSGGQ KQRIAIARAV
0501: IKAPRILLLD EATSALDSES ERVVQEALDS AALGRTTIII AHRLSTIRNA DIIAVVQDGH IVETGPHDQL IQNPAGLYTS LVRLQQADQP WKAVTSLTPA
0601: TSLYLHTTSS NSTPPNSPLH SMPAGEEAAT VTSGIPVPSF WRLLAMNYPE WKEASIGCLS AVLSGAIQPL YAFSMGSMIS VYFLPDHEEM KKHTRIYSVC
0701: FFALFVLSLL SNICQHYSFA AMGENLTKRV REMMFSKILS FEVGWFDQDD NSTGAICFRL AKDATVVRSL VGDRMSLIVQ TFSAVTISGT MGLIIAWRLA
0801: MVMIAIQPLM IISFYTRTVL LKSMSAKAIK AQEESGKLAA EAVSNLRTIT AFSSQARILK MLEVAQEGPI QESIRQAWFS GIALGISQSL LSCSWALDFW
0901: YGGKLLSHGY ISSKAFLQTF MILVSTSRVI ADAGSMTNDL AKGIDAIRSV FAILDRLTQI QPENPDSYQP EKIRGHVQIQ EVDFAYPARP NAFIFKGFSI
1001: DIDPGKSTAL VGESGSGKST IIGLIERFYD PLKGIVKLDG KDIRTYHLRV LRKHIALVSQ EPILFAGTIR DNIAYGASSD EINESEIIEA ARAANAHDFI
1101: VALKHGYDTW CASKGLQLSG GQRQRIAIAR AILKNAAILL LDEATSALDS QSETVVQEAL ERVTMGRTSV VVAHRLSTIQ NCDLIAVVDK GNVVEKGTHT
1201: SLLEKGPTGT YYSLVNRQRG LISPT

Best Arabidopsis Sequence Match ( AT3G28345.1 )
(BLAST)

0001: MGKEEEKESG RNKMNCFGSV RSIFMHADGV DWLLMGLGLI GAVGDGFTTP LVLLITSKLM NNIGGSSFNT DTFMQSISKN SVALLYVACG SWVVCFLEGY
0101: CWTRTGERQT ARMREKYLRA VLRQDVGYFD LHVTSTSDVI TSVSSDSFVI QDVLSEKLPN FLMSASTFVG SYIVGFILLW RLAIVGLPFI VLLVIPGLMY
0201: GRALISISRK IREEYNEAGF VAEQAISSVR TVYAFSGERK TISKFSTALQ GSVKLGIKQG LAKGITIGSN GITFAMWGFM SWYGSRMVMY HGAQGGTVFA
0301: VAAAIAIGGV SLGGGLSNLK YFFEAASVGE RIMEVINRVP KIDSDNPDGH KLEKIRGEVE FKNVKFVYPS RLETSIFDDF CLRVPSGKTV ALVGGSGSGK
0401: STVISLLQRF YDPLAGEILI DGVSIDKLQV KWLRSQMGLV SQEPALFATT IKENILFGKE DASMDDVVEA AKASNAHNFI SQLPNGYETQ VGERGVQMSG
0501: GQKQRIAIAR AIIKSPTILL LDEATSALDS ESERVVQEAL ENASIGRTTI LIAHRLSTIR NADVISVVKN GHIVETGSHD ELMENIDGQY STLVHLQQIE
0601: KQDINVSVKI GPISDPSKDI RNSSRVSTLS RSSSANSVTG PSTIKNLSED NKPQLPSFKR LLAMNLPEWK QALYGCISAT LFGAIQPAYA YSLGSMVSVY
0701: FLTSHDEIKE KTRIYALSFV GLAVLSFLIN ISQHYNFAYM GEYLTKRIRE RMLSKVLTFE VGWFDRDENS SGAICSRLAK DANVVRSLVG DRMALVVQTV
0801: SAVTIAFTMG LVIAWRLALV MIAVQPVIIV CFYTRRVLLK SMSKKAIKAQ DESSKLAAEA VSNVRTITAF SSQERIMKML EKAQESPRRE SIRQSWFAGF
0901: GLAMSQSLTS CTWALDFWYG GRLIQDGYIT AKALFETFMI LVSTGRVIAD AGSMTTDLAK GSDAVGSVFA VLDRYTSIDP EDPDGYETER ITGQVEFLDV
1001: DFSYPTRPDV IIFKNFSIKI EEGKSTAIVG PSGSGKSTII GLIERFYDPL KGIVKIDGRD IRSYHLRSLR RHIALVSQEP TLFAGTIREN IIYGGVSDKI
1101: DEAEIIEAAK AANAHDFITS LTEGYDTYCG DRGVQLSGGQ KQRIAIARAV LKNPSVLLLD EATSALDSQS ERVVQDALER VMVGRTSVVI AHRLSTIQNC
1201: DAIAVLDKGK LVERGTHSSL LSKGPTGIYF SLVSLQTTSG

Arabidopsis Description

ABCB15ABC transporter B family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.