Factsheet for VIT_18s0001g14660.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17450	Soybean	plasma membrane	77.54	75.68
KRH05968	Soybean	plasma membrane	77.13	75.28
CDX84897	Canola	cytosol	7.05	72.88
Bra032856.1-P	Field mustard	plasma membrane	70.98	69.9
CDY27639	Canola	plasma membrane	69.51	69.62
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	70.82	69.4
CDX84896	Canola	plasma membrane	58.93	68.41
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	51.64	50.4
VIT_02s0012g01660.t01	Wine grape	plasma membrane	50.49	49.56
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	19.67	44.04
VIT_14s0066g02320.t01	Wine grape	peroxisome	41.48	43.73
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.52	43.72
VIT_01s0137g00350.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	43.93	42.81
VIT_10s0003g02540.t01	Wine grape	plasma membrane	42.79	42.4
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	42.21	42.04
VIT_10s0003g02570.t01	Wine grape	plasma membrane	42.62	41.97
VIT_11s0016g03160.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	41.89	41.71
VIT_17s0000g09760.t01	Wine grape	plasma membrane	40.16	40.94
VIT_10s0003g02580.t01	Wine grape	plasma membrane	41.72	40.24
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.54	40.02
VIT_05s0020g00890.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.13	39.72
VIT_16s0098g00570.t01	Wine grape	cytosol, plasma membrane, vacuole	37.87	38.89
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	40.41	37.92
VIT_06s0004g04100.t01	Wine grape	cytosol	41.8	36.3
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	41.23	31.9

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB46054	ProteinID:CCB46054.1	UniProt:F6H1M6	EMBL:FN595227
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF235	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI000210A342	ArrayExpress:VIT_18s0001g14660	EnsemblPlantsGene:VIT_18s0001g14660	EnsemblPlants:VIT_18s0001g14660.t01	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:12710695..12716340

Molecular Weight (calculated)

132502.0 Da

IEP (calculated)

8.297

GRAVY (calculated)

0.182

Length

1220 amino acids

Sequence
(BLAST)

0001: MEGLELRSIQ ISDQSPLPEK DQQSNSSPKD TVSFFGLFAA ADTLDCFFMF FGSIGACIHG AALPVFFVLF GRMIDSLGRL SSDPDKLSSQ VSRHALYLVY
0101: LGLGVLASAW IGVAFWMQTG ERQTARLRLK YLQSVLRQDI NFFDTEARDK NITFHISNDA ILLQDAIGDK IGHGLRYLSQ FFVGFAIGFT SVWQLTLLTV
0201: AVVPLMAIAG GAYTVIMTTL SEKGEAAYAE AGKVAEEAIS QVRTVYSFVG EDRAVETYSR SLQKALKLGK KSGFAKGIGI GFTYGLLFCA WALLLWYASK
0301: LVRHGDTNGG KAFTTILNVI FSGFALGQAA PNLAAIAKGR AAAANIVNMI ETDSTASKRL DNGIMLPKVA GQLEFCEVCF AYPSRPSMVF ENLSFSIYAG
0401: KTFAVVGPSG SGKSTIISMV QRFYEPTSGK ILLDGHDIKN LRLKWLRAQM GLVSQEPALF ATTIAGNILY GKEDADMDQV IEAAKAANAH SFVQGLPDGY
0501: QTQVGEGGTQ LSGGQKQRIA IARAVLRNPK ILLLDEATSA LDAESELIVQ KALDKIMLNR TTIVVAHRLS TIRDVNKIIV LKNGQVVESG THLELISQGG
0601: EYATLVSLQV SEHGKSPKLQ PYDQNMASSS SPPIPSLWQL VKLNAPEWPF AVLGSVGAIL AGMEAPLFAL GITHVLTAFY SGKDFQIKRE VDHISLIFVG
0701: AAILTIFIYL LQHYFYTLMG ERLTTRIRLL MFSAILSNEI GWFDLDENST GSLTSKLAAD ATLVRSALAD RLSTIVQNVA LTVTAFVIAF TLSWRIASVI
0801: IASFPLLIGA SITEQLFLKG FGGDYTRAYA QATAVAREAI ANIRTVAAFG AEDRISLQFA SELNQPNKQA LLRGHISGFG YGVSQLFAFC SYALGLWYAS
0901: VLIKHNDSNF GDIIKSFMVL IITAFSVAET LALTPDIVKG SQALGSVFSI LQRKTAINRD NPTSSVVTDI QGDIEFRNVS FRYPARPDLI IFKDLNLKIS
1001: AGKSLAIVGQ SGSGKSTVIS LVMRFYDPTS GAVMIDGFDI KGLNLRSLRM KIGLVQQEPA LFSTTIYENI RYGNEEASEI EIMKAARAAN AHSFISRMPE
1101: GYQTQVGDRG VQLSGGQKQR VAIARAILKD PSILLLDEAT SALDTASEKL VQEALDTLME GRTTILIAHR LSTIHNADSI AVLQHGKVVE TGDHRQLITR
1201: PGSIYKQLVS LQQEKGEVPN

Best Arabidopsis Sequence Match ( AT1G27940.1 )
(BLAST)

0001: MDNTERSSNG NIQAETEAKE EKKNIKKESV SLMGLFSAAD KLDYFLMLLG GLGACIHGAT LPLFFVFFGK MLDSLGNLST DPKAISSRVS QNALYLVYLG
0101: LVNFVSAWIG VSCWMQTGER QTARLRINYL KSILAKDITF FDTEARDSNL IFHISSDAIL VQDAIGDKTD HVLRYLSQFI AGFVIGFLSV WQLTLLTLGV
0201: VPLIAIAGGG YAIVMSTISE KSETAYADAG KVAEEVMSQV RTVYAFVGEE KAVKSYSNSL KKALKLGKRS GLAKGLGVGL TYSLLFCAWA LLLWYASLLV
0301: RHGKTNGAKA FTTILNVIFS GFALGQAAPS LSAIAKGRVA AANIFRMIGN NNSESSQRLD EGTTLQNVAG RIEFQKVSFA YPSRPNMVFE NLSFTIRSGK
0401: TFAFVGPSGS GKSTIISMVQ RFYEPNSGEI LLDGNDIKSL KLKWFREQLG LVSQEPALFA TTIASNILLG KENANMDQII EAAKAANADS FIKSLPNGYN
0501: TQVGEGGTQL SGGQKQRIAI ARAVLRNPKI LLLDEATSAL DAESEKIVQQ ALDNVMEKRT TIVVAHRLST IRNVDKIVVL RDGQVRETGS HSELMLRGGD
0601: YATLVNCQET EPQENSRSIM SETCKSQAGS SSSRRVSSSR RTSSFRVDQE KTKNDDSKKD FSSSSMIWEL IKLNSPEWPY ALLGSIGAVL AGAQTPLFSM
0701: GIAYVLTAFY SPFPNVIKRD VEKVAIIFAG AGIVTAPIYL LQHYFYTLMG ERLTSRVRLS LFSAILSNEI GWFDLDENNT GSLTSILAAD ATLVRSALAD
0801: RLSTIVQNLS LTVTALALAF FYSWRVAAVV TACFPLLIAA SLTEQLFLKG FGGDYTRAYS RATSVAREAI ANIRTVAAYG AEKQISEQFT CELSKPTKNA
0901: FVRGHISGFG YGLSQFLAFC SYALGLWYVS VLINHKETNF GDSIKSFMVL IVTAFSVSET LALTPDIVKG TQALGSVFRV LHRETKISPD QPNSRMVSQV
1001: KGDIEFRNVS FVYPTRPEID IFKNLNLRVS AGKSLAVVGP SGSGKSTVIG LIMRFYDPSN GNLCIDGQDI KTLNLRSLRK KLALVQQEPA LFSTTIYENI
1101: KYGNENASEA EIMEAAKAAN AHEFIIKMEE GYKTHAGDKG VQLSGGQKQR VAIARAVLKD PSVLLLDEAT SALDTSSEKL VQEALDKLMK GRTTVLVAHR
1201: LSTIRKADTV AVLHKGRVVE KGSHRELVSI PNGFYKQLTS LQEVL

Arabidopsis Description

ABCB13PGP13 [Source:UniProtKB/TrEMBL;Acc:A0A178W4F4]
SUBAcon: [peroxisome,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.