Factsheet for VIT_05s0020g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011703	Potato	cytosol	10.74	83.23
Os05t0137200-01	Rice	plasma membrane	22.95	75.57
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	75.73	75.56
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	64.45	75.41
KRH19486	Soybean	cytosol, peroxisome, plasma membrane	72.41	73.55
KRH02481	Soybean	plasma membrane	71.95	73.02
OQU77362	Sorghum	mitochondrion, plasma membrane	63.14	70.8
GSMUA_Achr1P25070_001	Banana	plasma membrane	48.76	69.65
KXG32330	Sorghum	plastid	67.93	68.67
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	67.7	68.54
KRH02482	Soybean	cytosol, peroxisome, plasma membrane	67.77	67.31
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	65.22	66.2
KRH02484	Soybean	plasma membrane	64.76	66.19
TraesCS1A01G081300.1	Wheat	unclear	65.22	66.14
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	65.22	66.14
VIT_10s0003g02540.t01	Wine grape	plasma membrane	62.83	66.04
HORVU1Hr1G017460.3	Barley	plasma membrane	65.07	65.63
KRH19480	Soybean	plasma membrane	60.9	65.34
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	67.16	65.09
VIT_10s0003g02570.t01	Wine grape	plasma membrane	61.98	64.73
KRH19479	Soybean	plasma membrane	64.45	64.2
Solyc12g098840.1.1	Tomato	peroxisome	63.14	63.83
GSMUA_Achr9P16700_001	Banana	plasma membrane	62.29	63.46
PGSC0003DMT400011930	Potato	peroxisome	62.67	63.01
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	26.51	62.94
VIT_10s0003g02580.t01	Wine grape	plasma membrane	60.74	62.13
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	43.04	44.56
VIT_02s0012g01660.t01	Wine grape	plasma membrane	42.43	44.17
VIT_14s0066g02320.t01	Wine grape	peroxisome	39.1	43.73
VIT_18s0001g14660.t01	Wine grape	peroxisome, plasma membrane, vacuole	39.72	42.13
VIT_11s0016g03160.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	39.26	41.47
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	39.1	41.31
VIT_01s0137g00350.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	39.34	40.66
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.73	39.88
VIT_17s0000g09760.t01	Wine grape	plasma membrane	35.94	38.85
VIT_16s0098g00570.t01	Wine grape	cytosol, plasma membrane, vacuole	34.23	37.29
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	36.32	36.15
VIT_06s0004g04100.t01	Wine grape	cytosol	37.71	34.73
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	38.87	31.9

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100244232	wikigene:100244232	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:AM459930	ProteinID:CAN81148
ProteinID:CAN81148.1	ProteinID:CCB50296	ProteinID:CCB50296.1	UniProt:F6HE44	EMBL:FN595749	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	EntrezGene:LOC100244232
wikigene:LOC100244232	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF290	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI000210877B	ArrayExpress:VIT_05s0020g00890	EnsemblPlantsGene:VIT_05s0020g00890	EnsemblPlants:VIT_05s0020g00890.t01	RefSeq:XP_002275143
RefSeq:XP_002275143.2	RefSeq:XP_010649698.1	RefSeq:XP_010649699.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:2720196..2725861

Molecular Weight (calculated)

140136.0 Da

IEP (calculated)

6.863

GRAVY (calculated)

0.118

Length

1294 amino acids

Sequence
(BLAST)

0001: MAGENGWRGG KYTEQATAST SHSSVMEIEK VPNDTDSKQE TDTNREKEES TRTVPFCKLF SFADSWDYLF MFVGAVAAAA NGVSTPLMTI LFGDVINSFG
0101: KDSNSKDMVH EVSKVSLKFV YLAIGTGVAS FLQVTCWMLT GERQAARIRS LYLKTILRQD VGFFDKFTNA GEVVGRMSGD TVFIQDAMGE KVGKFIQLMA
0201: TFLGGFIVAF CKGWLLTLVM LSCFPPLVIV GAFTTMFITK MASRGQAAYS VAAVVVEQTI GSIRTVASFT GEKQAIAKYN QSLSKAYTSG VQESVLSGLG
0301: FGLFMFVLFA SYALAMWFGS KMIIDKGYTG GAVMNIIFSV VAGSMSLGQA SPCLSAFGSG QAAAFKMFET IERKPEIDAY SSDGQKLDDI QGDVELRDVY
0401: FSYPTRPDEQ VFKGFSLSIP SGTTAALVGE SGSGKSTVIS LIERFYDPQA GEVLIDGINL KEFQLRWIRG KIGLVSQEPV LFTSSIRDNI AYGKDGATIE
0501: EIRAAAELAN ASKFIDKLPQ GLDTLVGEHG TQLSGGQKQR VAIARAILKD PRILLLDEAT SALDAESERV VQEALDRVMI NRTTIIVAHR LSTVRNADMI
0601: AVIHRGKIVE KGAHSELIKD PDGAYSLLIR LQEISSEQNA SHDQEKPEIS VDSGRHSSKR MSLLRSISRS SSIGQSSRHS FSMSFGVPPD INIIETAPDG
0701: QDPAPLEHPP KVPLGRLAYL NKPEIPFLLL GTIAAVVNGA VFPVFGILIS SIIKSFFKPP HELRKDARFW ALMFVVLGLV SFSSLSLRSY LFSTAGFKLI
0801: KRIRAMCFEK VVYMEVSWFD EADHSSGSIG ARLSADAAMV RSLVGDALSL LVQNSAAMIA GLVIAFVANW KMSFIILVLL PLFGANGYVQ VKFLKGFTAD
0901: AKKKYEEASQ VANDAVGSIR TVASFCAEEK VMQLYQQKCE GPMNAGIREG LVGGVGYGVS FFLLFAVYAT AFYAGARLVD VGQATFAEVF QVFFVLTLAA
1001: VGVSQSSSLA PDTGKAKNAA ASIFAILDRE SKIDSSDESG TTLENVKGEI EFHHVSFRYP TRPDIQIFRD LCLAIHSGKT VALVGESGSG KSTAISLLQR
1101: FYDPDSGHIT LDGVEIQKLQ LKWFRQQMGL VSQEPVLFNE TIRANIAYGK EGNATEAEIS AAAELANAHK FISGLQQGYD TTVGERGIQL SGGQKQRVAI
1201: ARAIVKDPKI LLLDEATSAL DAESERVVQD ALDRVMVNRT TLVVAHRLST IKGADLIAVV KNGAIAEKGK HETLINIKDG IYASLVALHM SASS

Best Arabidopsis Sequence Match ( AT1G02520.3 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.