Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 2
- mitochondrion 1
- peroxisome 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_11s0052g00440.t01 | |
| VIT_13s0064g00580.t01 | |
| VIT_17s0000g02420.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36910.1 | VIT_17s0000g02420.t01 | AT1G73590.1 | 17237354 |
| AT2G36910.1 | VIT_13s0064g00580.t01 | AT3G21640.1 | 14517332 |
| AT2G36910.1 | VIT_11s0052g00440.t01 | AT5G57090.1 | 17237354 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96023 | Soybean | cytosol, peroxisome, plasma membrane | 86.26 | 87.23 |
| KRH67730 | Soybean | cytosol, peroxisome, plasma membrane | 86.19 | 86.96 |
| AT2G36910.1 | Thale cress | peroxisome | 82.27 | 86.63 |
| KRH32507 | Soybean | cytosol, nucleus, plasma membrane | 85.89 | 86.6 |
| Solyc09g008240.2.1 | Tomato | peroxisome | 83.6 | 86.15 |
| PGSC0003DMT400009924 | Potato | peroxisome | 84.49 | 85.82 |
| KRH19897 | Soybean | cytosol, peroxisome, plasma membrane | 84.93 | 85.76 |
| CDY46744 | Canola | cytosol, peroxisome, plasma membrane | 83.53 | 84.53 |
| Bra023087.1-P | Field mustard | cytosol, nucleus, plasma membrane | 83.53 | 84.47 |
| CDX79704 | Canola | plasma membrane | 83.16 | 83.97 |
| Bra017216.1-P | Field mustard | cytosol, nucleus, plasma membrane | 82.79 | 83.78 |
| TraesCS7A01G284900.1 | Wheat | plasma membrane | 72.9 | 79.21 |
| GSMUA_Achr4P12130_001 | Banana | cytosol | 76.22 | 76.61 |
| GSMUA_Achr4P04430_001 | Banana | cytosol, peroxisome, plasma membrane | 74.67 | 74.61 |
| Os08t0564300-04 | Rice | plasma membrane | 73.19 | 73.74 |
| TraesCS7B01G181700.1 | Wheat | cytosol | 74.45 | 73.68 |
| TraesCS7D01G284100.1 | Wheat | cytosol | 74.52 | 73.38 |
| HORVU7Hr1G063020.3 | Barley | cytosol | 74.59 | 71.58 |
| Zm00001d031871_P001 | Maize | cytosol | 74.45 | 71.19 |
| OQU80682 | Sorghum | plasma membrane | 72.75 | 63.92 |
| VIT_14s0108g00430.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 50.81 | 55.04 |
| VIT_02s0012g01660.t01 | Wine grape | plasma membrane | 44.61 | 48.59 |
| VIT_18s0001g14660.t01 | Wine grape | peroxisome, plasma membrane, vacuole | 43.72 | 48.52 |
| VIT_10s0003g02550.t01 | Wine grape | cytosol, nucleus, peroxisome | 19.05 | 47.34 |
| VIT_14s0066g02320.t01 | Wine grape | peroxisome | 38.7 | 45.29 |
| VIT_01s0137g00350.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 41.21 | 44.57 |
| VIT_19s0085g00060.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 39.44 | 43.59 |
| VIT_10s0003g02540.t01 | Wine grape | plasma membrane | 39.51 | 43.46 |
| VIT_10s0003g02570.t01 | Wine grape | plasma membrane | 39.14 | 42.78 |
| VIT_10s0003g02580.t01 | Wine grape | plasma membrane | 39.07 | 41.82 |
| VIT_05s0020g00890.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 39.88 | 41.73 |
| VIT_07s0005g02660.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 39.81 | 41.56 |
| VIT_11s0016g03160.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 37.59 | 41.55 |
| VIT_17s0000g09760.t01 | Wine grape | plasma membrane | 36.56 | 41.35 |
| VIT_16s0098g00570.t01 | Wine grape | cytosol, plasma membrane, vacuole | 35.6 | 40.57 |
| VIT_13s0019g00310.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 37.44 | 39.0 |
| VIT_06s0004g04100.t01 | Wine grape | cytosol | 38.26 | 36.87 |
| VIT_09s0002g00750.t01 | Wine grape | peroxisome, plastid | 38.4 | 32.97 |
Protein Annotations
| Gene3D:1.20.1560.10 | EntrezGene:100262262 | wikigene:100262262 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf | InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ProteinID:CCB55335 | ProteinID:CCB55335.1 |
| UniProt:F6HKB3 | EMBL:FN595991 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | GO:GO:0060919 |
| InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | EntrezGene:LOC100262262 | wikigene:LOC100262262 | InterPro:P-loop_NTPase |
| PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24221 |
| PANTHER:PTHR24221:SF384 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | TIGR:TC52804 | TIGR:TC66273 |
| TIGR:TC67662 | TMHMM:TMhelix | UniParc:UPI0001983F20 | ArrayExpress:VIT_08s0007g05060 | EnsemblPlantsGene:VIT_08s0007g05060 | EnsemblPlants:VIT_08s0007g05060.t01 |
| unigene:Vvi.5387 | RefSeq:XP_002266505 | RefSeq:XP_002266505.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr8:+:18985363..18992099
Molecular Weight (calculated)
148125.0 Da
IEP (calculated)
8.122
GRAVY (calculated)
0.016
Length
1354 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSQEAVEIKT TIEQWRWSEM QGLELVSPNT DDFKSHPTAS RVSKSSAEGG EARDMDGTEP KNQPQPQPQP QAQAQAHASG SGEKTELVPS SGFGELFRFA
0101: DGLDYVLMTI GSIGAIVHGS SLPIFLRFFA DLVNSFGSNA NNIDKMMQEV LKYAFYFLVV GAAIWASSWA EISCWMWTGE RQSTKMRIKY LEAALNQDIQ
0201: FFDTEVRTSD VVFAVNTDAV MVQDAISEKL GNFIHYMATF VSGFVVGFTA VWQLALVTLA VVPLIAVIGG IHTATLAKLS AKSQEALSEA GNIAEQTIVQ
0301: IRVVFAFVGE SRALQAYSAA LRISQRLGYK SGFSKGMGLG ATYFTVFCCY ALLLWYGGYL VRHHYTNGGL AIATMFSVML GGLALGQSAP SMSAFAKAKV
0401: AAAKIFRIID HKPNIERNGE TGLELESVTG QVELKNVDFS YPSRPEVRIL SDFSLNVPAG KTIALVGSSG SGKSTVVSLI ERFYDPTSGQ VLLDGHDIKT
0501: LKLRWLRQQI GLVSQEPALF ATTIKENMLL GRPDATLVEI EEAARVANAY SFIVKLPEGF DTQVGERGFQ LSGGQKQRIA IARAMLKNPA ILLLDEATSA
0601: LDSESEKLVQ EALDRFMIGR TTLVIAHRLS TIRKADLVAV LQQGSVSEIG THDELIAKGE NGVYAKLIRM QETAHETALS NARKSSARPS SARNSVSSPI
0701: IARNSSYGRS PYSRRLSDFS TSDFSLSLDA SHPNYRLEKL AFKEQASSFW RLAKMNSPEW VYALFGTIGS VVCGSISAFF AYVLSAVLSV YYNQNHAYMS
0801: KQIGKYCYLL IGVSSAALLF NTLQHFFWDV VGENLTKRVR EKMLAAVLKN EMAWFDQEEN ESARIAARLA LDANNVRSAI GDRISVIMQN SALMLVACTA
0901: GFVLQWRLAL VLIAVFPVVV AATVLQKMFM QGFSGDLEGA HAKATQLAGE AIANVRTVAA FNSEAKIVGL FSTNLQTPLR RCFWKGQIAG SGYGIAQFLL
1001: YASYALGLWY ASWLVKHGIS DFSKTIRVFM VLMVSANGAA ETLTLAPDFI KGGRAMRSVF DLLDRKTEIE PDDPDAIPVT DRLRGEVELK HVDFSYPSRP
1101: DVPVFRDLCL RARAGKTLAL VGPSGCGKSS VIALVQRFYE PTSGRVMIDG KDIRKYNLKS LRRHIAIVPQ EPCLFATTIY ENIAYGHESA TEAEIIEAAT
1201: LANAHKFVSA LPDGYKTFVG ERGVQLSGGQ KQRIAIARAF LRKAELMLLD EATSALDAES ERCIQEALER ACSGKTTIVV AHRLSTIRNA HTIAVIDDGK
1301: VAEQGSHSHL LKNYPDGCYA RMIQLQRFTH GQAVGMASGS SSSTRPRDEE EREG
0101: DGLDYVLMTI GSIGAIVHGS SLPIFLRFFA DLVNSFGSNA NNIDKMMQEV LKYAFYFLVV GAAIWASSWA EISCWMWTGE RQSTKMRIKY LEAALNQDIQ
0201: FFDTEVRTSD VVFAVNTDAV MVQDAISEKL GNFIHYMATF VSGFVVGFTA VWQLALVTLA VVPLIAVIGG IHTATLAKLS AKSQEALSEA GNIAEQTIVQ
0301: IRVVFAFVGE SRALQAYSAA LRISQRLGYK SGFSKGMGLG ATYFTVFCCY ALLLWYGGYL VRHHYTNGGL AIATMFSVML GGLALGQSAP SMSAFAKAKV
0401: AAAKIFRIID HKPNIERNGE TGLELESVTG QVELKNVDFS YPSRPEVRIL SDFSLNVPAG KTIALVGSSG SGKSTVVSLI ERFYDPTSGQ VLLDGHDIKT
0501: LKLRWLRQQI GLVSQEPALF ATTIKENMLL GRPDATLVEI EEAARVANAY SFIVKLPEGF DTQVGERGFQ LSGGQKQRIA IARAMLKNPA ILLLDEATSA
0601: LDSESEKLVQ EALDRFMIGR TTLVIAHRLS TIRKADLVAV LQQGSVSEIG THDELIAKGE NGVYAKLIRM QETAHETALS NARKSSARPS SARNSVSSPI
0701: IARNSSYGRS PYSRRLSDFS TSDFSLSLDA SHPNYRLEKL AFKEQASSFW RLAKMNSPEW VYALFGTIGS VVCGSISAFF AYVLSAVLSV YYNQNHAYMS
0801: KQIGKYCYLL IGVSSAALLF NTLQHFFWDV VGENLTKRVR EKMLAAVLKN EMAWFDQEEN ESARIAARLA LDANNVRSAI GDRISVIMQN SALMLVACTA
0901: GFVLQWRLAL VLIAVFPVVV AATVLQKMFM QGFSGDLEGA HAKATQLAGE AIANVRTVAA FNSEAKIVGL FSTNLQTPLR RCFWKGQIAG SGYGIAQFLL
1001: YASYALGLWY ASWLVKHGIS DFSKTIRVFM VLMVSANGAA ETLTLAPDFI KGGRAMRSVF DLLDRKTEIE PDDPDAIPVT DRLRGEVELK HVDFSYPSRP
1101: DVPVFRDLCL RARAGKTLAL VGPSGCGKSS VIALVQRFYE PTSGRVMIDG KDIRKYNLKS LRRHIAIVPQ EPCLFATTIY ENIAYGHESA TEAEIIEAAT
1201: LANAHKFVSA LPDGYKTFVG ERGVQLSGGQ KQRIAIARAF LRKAELMLLD EATSALDAES ERCIQEALER ACSGKTTIVV AHRLSTIRNA HTIAVIDDGK
1301: VAEQGSHSHL LKNYPDGCYA RMIQLQRFTH GQAVGMASGS SSSTRPRDEE EREG
0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA
Arabidopsis Description
ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.