Factsheet for VIT_13s0064g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00280.t01
VIT_08s0007g05060.t01
VIT_14s0108g00430.t01
VIT_16s0050g01150.t01
VIT_18s0001g14660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	VIT_18s0001g14660.t01	AT1G27940.1	14517332
AT3G21640.1	VIT_08s0007g05060.t01	AT2G36910.1	14517332
AT3G21640.1	VIT_14s0108g00430.t01	AT3G28860.1	14517332
AT3G21640.1	VIT_02s0025g00280.t01	AT5G52640.1	12410806
AT3G21640.1	VIT_16s0050g01150.t01	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34049	Canola	cytosol	24.11	87.13
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	81.92	80.81
PGSC0003DMT400017681	Potato	cytosol	81.1	80.43
KRH39924	Soybean	endoplasmic reticulum	81.37	80.27
Solyc01g087470.2.1	Tomato	cytosol	70.14	78.77
Bra006895.1-P	Field mustard	cytosol	76.71	76.71
CDX78057	Canola	cytosol	73.97	76.27
CDY29061	Canola	cytosol	74.52	76.19
GSMUA_Achr6P12690_001	Banana	cytosol	77.81	75.94
Bra012823.1-P	Field mustard	cytosol	74.25	75.91
AT3G21640.1	Thale cress	cytosol	75.62	75.62
CDX73664	Canola	cytosol	76.71	75.07
EES07974	Sorghum	cytosol	74.25	73.64
Os12t0145500-01	Rice	cytosol	74.25	73.24
Os11t0148300-01	Rice	cytosol	74.79	72.8
Zm00001d004930_P001	Maize	mitochondrion	73.97	72.19
TraesCS5B01G131200.1	Wheat	cytosol	72.33	71.35
TraesCS5A01G134500.3	Wheat	cytosol	72.05	71.27
CDX90622	Canola	cytosol	76.99	71.14
TraesCS5D01G139000.1	Wheat	cytosol	71.78	70.81
CDY64639	Canola	endoplasmic reticulum, extracellular	49.59	67.54
HORVU5Hr1G041060.1	Barley	cytosol, plastid	71.78	61.65
VIT_03s0017g01060.t01	Wine grape	cytosol, mitochondrion, plastid	7.67	25.0
VIT_00s0260g00070.t01	Wine grape	cytosol	6.58	23.53
VIT_00s0958g00020.t01	Wine grape	cytosol, peroxisome	17.26	18.42
VIT_00s0769g00010.t01	Wine grape	peroxisome	28.77	18.39
VIT_13s0019g01900.t01	Wine grape	cytosol	9.32	18.09
VIT_18s0001g08830.t01	Wine grape	cytosol	24.38	14.83
VIT_08s0007g01460.t01	Wine grape	nucleus	24.66	14.52
VIT_08s0040g00790.t01	Wine grape	cytosol	17.53	13.45

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100253308	wikigene:100253308	MapMan:18.12.2	Gene3D:3.10.50.40	ProteinID:CBI24920
ProteinID:CBI24920.3	UniProt:D7T339	EMBL:FN595509	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016853	GO:GO:0019538	GO:GO:0048366	InterPro:IPR001179	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100253308	wikigene:LOC100253308	PFAM:PF00254	PFAM:PF13181
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR43811
PANTHER:PTHR43811:SF21	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	TIGR:TC55528	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00015CA743	ArrayExpress:VIT_13s0064g00580	EnsemblPlantsGene:VIT_13s0064g00580	EnsemblPlants:VIT_13s0064g00580.t01
unigene:Vvi.452	RefSeq:XP_002277645	RefSeq:XP_002277645.1	RefSeq:XP_002277668	RefSeq:XP_002277668.1	RefSeq:XP_010659403.1

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7T339]

Coordinates

chr13:-:22298521..22306365

Molecular Weight (calculated)

41954.0 Da

IEP (calculated)

5.555

GRAVY (calculated)

-0.698

Length

365 amino acids

Sequence
(BLAST)

001: MEDVEELQSQ KPDQDDENEI VTENAAFVHG EPLQDGTGPP KVDSEVEVLH EKVTKQIMKE GHGQKPSKYS TCFLHYRAWT ESTQHKFEDT WNEQRPVEIV
101: IGKEKKEMTG LAIGVSNMKS GERALLHVGW ELGYGKEGSF SFPNVPPMAD ILYEVELIGF DETKEGKARG DMTVEERIGA ADRRKMDGNV YFKEEKLEEA
201: MQQYEMAIAY MGDDFMFQLF GKYRDMALAV KNPCHLNMAA CLIKLKRYEE AIGQCSIVLA EDENNVKALF RRGKARAELG QTDAAREDFS KARKYAPEDK
301: AISRELRLLA EHDKAVYQKQ KEIYKGIFGP PPEPKPKKTN WLILFWQWLV SLLYSLFKRE RHKAD

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.