Factsheet for Solyc01g087470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g087870.2.1
Solyc03g007890.2.1
Solyc08g006880.2.1
Solyc09g008240.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	Solyc08g006880.2.1	AT2G34660.1	15133126
AT3G21640.1	Solyc09g008240.2.1	AT2G36910.1	14517332
AT3G21640.1	Solyc02g087870.2.1	AT3G28860.1	14517332
AT3G21640.1	Solyc03g007890.2.1	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017681	Potato	cytosol	97.23	85.87
VIT_13s0064g00580.t01	Wine grape	cytosol	78.77	70.14
CDY34049	Canola	cytosol	21.23	68.32
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	76.31	67.03
KRH39924	Soybean	endoplasmic reticulum	75.08	65.95
CDY29061	Canola	cytosol	71.08	64.71
CDX78057	Canola	cytosol	69.85	64.12
Bra012823.1-P	Field mustard	cytosol	70.15	63.87
Bra006895.1-P	Field mustard	cytosol	70.15	62.47
AT3G21640.1	Thale cress	cytosol	69.23	61.64
EES07974	Sorghum	cytosol	69.54	61.41
CDX73664	Canola	cytosol	69.85	60.86
Os12t0145500-01	Rice	cytosol	68.31	60.0
Os11t0148300-01	Rice	cytosol	68.62	59.47
Zm00001d004930_P001	Maize	mitochondrion	68.31	59.36
GSMUA_Achr6P12690_001	Banana	cytosol	68.31	59.36
TraesCS5A01G134500.3	Wheat	cytosol	66.46	58.54
TraesCS5B01G131200.1	Wheat	cytosol	66.46	58.38
TraesCS5D01G139000.1	Wheat	cytosol	66.15	58.11
CDX90622	Canola	cytosol	70.46	57.97
CDY64639	Canola	endoplasmic reticulum, extracellular	47.08	57.09
HORVU5Hr1G041060.1	Barley	cytosol, plastid	64.62	49.41
Solyc10g078250.1.1	Tomato	cytosol	6.46	23.08
Solyc01g105710.2.1	Tomato	extracellular	5.85	16.96
Solyc09g092690.2.1	Tomato	cytosol	24.92	13.94
Solyc06g083190.2.1	Tomato	extracellular	24.62	13.94
Solyc11g011420.1.1	Tomato	cytosol, plastid	24.92	13.87
Solyc09g057660.2.1	Tomato	cytosol	23.69	13.82
Solyc04g077660.2.1	Tomato	cytosol	23.38	13.01
Solyc04g011620.2.1	Tomato	nucleus	5.85	10.22
Solyc10g078260.1.1	Tomato	cytosol	7.69	5.79

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.10.50.40	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007275
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0048366	InterPro:IPR001179	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4AYD7	PFAM:PF00254	PFAM:PF13181	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR43811	PANTHER:PTHR43811:SF21	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc01g087470.2	EnsemblPlants:Solyc01g087470.2.1	TMHMM:TMhelix	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000276318E	:	:	:

Description

No Description!

Coordinates

chr1:+:82428205..82435257

Molecular Weight (calculated)

37230.6 Da

IEP (calculated)

7.119

GRAVY (calculated)

-0.658

Length

325 amino acids

Sequence
(BLAST)

001: MAEVEEEQQL QNSSVDQGST DEIIAEGASV VRGELPQDDA GPPKVDSEVE VLHEKVTKQI VKEGHGQKPS KYATCFVHYR AWAESTQHKF EDTWREQQPL
101: ELVIGKERKE MTGLAIGVNS MKSGEGKARG DMTVEERIGT ADRRKMDGNA LFKEEKLEEA MQQYEMAIAY MGDDFMFQLF GKFRDMALAV KNPCHLNMAA
201: CLLKLQRYDE AIAQCSIVLA EEENNVKALF RRGKARSILG QTDAAREDFL KARKLAPQDK AITRELNLIA EHEKAVYKKQ KELYKGLFGP RPEPKPKSRN
301: WLIVIWQWLL SLFYTLFRRK TRKDD

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.