Factsheet for Solyc06g083190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051809	Potato	cytosol	97.04	97.04
Solyc09g057660.2.1	Tomato	cytosol	85.02	87.61
KXG25560	Sorghum	cytosol	78.22	81.19
CDY15104	Canola	cytosol	39.02	80.87
TraesCS7A01G257100.1	Wheat	cytosol	78.22	80.32
CDY52281	Canola	cytosol	78.05	80.29
AT3G25230.2	Thale cress	cytosol	78.57	80.25
TraesCS7D01G257300.1	Wheat	cytosol	78.05	80.14
TraesCS7B01G153100.1	Wheat	golgi	77.87	79.96
GSMUA_Achr7P22780_001	Banana	cytosol	76.48	79.96
CDY15103	Canola	cytosol	77.7	79.93
Bra013224.1-P	Field mustard	cytosol	77.7	78.66
VIT_00s0260g00070.t01	Wine grape	cytosol	13.94	78.43
HORVU7Hr1G053170.6	Barley	cytosol	77.18	78.27
GSMUA_Achr10P...	Banana	cytosol	76.13	77.76
CDX86295	Canola	cytosol	77.35	77.49
Bra037477.1-P	Field mustard	cytosol	77.35	77.49
GSMUA_AchrUn_...	Banana	cytosol	78.22	77.28
Zm00001d031569_P001	Maize	plasma membrane	78.05	77.24
Os08t0525600-01	Rice	cytosol, extracellular, plasma membrane, plastid	77.7	76.9
CDX85348	Canola	cytosol	76.31	76.84
AT5G48570.1	Thale cress	cytosol	77.0	76.47
Solyc09g092690.2.1	Tomato	cytosol	75.09	74.18
CDY00831	Canola	cytosol	19.69	59.47
Solyc04g077660.2.1	Tomato	cytosol	51.39	50.51
Solyc10g078250.1.1	Tomato	cytosol	7.49	47.25
CDY00829	Canola	cytosol	27.35	43.98
Solyc10g078260.1.1	Tomato	cytosol	32.93	43.75
Solyc01g105710.2.1	Tomato	extracellular	8.36	42.86
Solyc04g011620.2.1	Tomato	nucleus	11.85	36.56
Solyc11g011420.1.1	Tomato	cytosol, plastid	29.27	28.77
Solyc01g087470.2.1	Tomato	cytosol	13.94	24.62

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	ncoils:Coil	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005528
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0061077	InterPro:IPR001179
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4CAH4	PFAM:PF00254	PFAM:PF00515
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516
PANTHER:PTHR10516:SF338	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc06g083190.2	EnsemblPlants:Solyc06g083190.2.1
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0001EF0CED	SEG:seg

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:K4CAH4]

Coordinates

chr6:-:48714847..48718910

Molecular Weight (calculated)

63575.3 Da

IEP (calculated)

4.943

GRAVY (calculated)

-0.683

Length

574 amino acids

Sequence
(BLAST)

001: MDDDFGIPPV EGMDEDMDLP EDSSTMKVGE EKEIGNQGLK KKLVKEGEGW ETPEPGDEVE VHYTGTLLDG TKFDSSRDRG DPFKFTLGQG QVIKGWDQGI
101: KTMKKGENAI FTIPPELAYG ESGSPPTIPP NATLQFDVEL LSWVSVKDIC KDGGIFKKIL TEGEKWENPK DLDEVLVKYE AQLENGTVVG KSDGVEFTVQ
201: DGHFCPALAK AVKTMKKGEK VQLTVKPQYG FGEKGKPASS DGGAVPPNAT LQINLELVSW KTVSNVTDDK KVVKKILKEG EGYERPNEGA VVKLKLVGKL
301: LDGTVFTKKG HDGESEDNLF EFKTDEEQVI DGLDRAVMTM KKGEAALLTI APEYAFGSSE SKQDSAVVPP NSTVHYEVEL VSFLKDKESW DMSTPEKIEA
401: AGKKKEEGNA LFKAGKYARA SKRYEKAAKF IEYDTNFSEE EKKQSKALKI TCNLNNAACK LKLKDYKQAE KLCTKVLELD SANVKALYRR AQAYMNMADL
501: DLAEFDIKKA LEIDPDNRDV KLEYKALKEK VKEINKKDAK FYGNMFAKLN KQDSSNSANS APKEPEPMSI DSKA

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.