CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80072	Canola	cytosol	91.31	94.74
CDY27510	Canola	cytosol	89.14	92.41
CDY48003	Canola	cytosol	87.93	91.69
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	93.56	90.44
CDX67881	Canola	cytosol	79.24	82.02
CDY25095	Canola	cytosol	79.32	81.76
Os05t0137200-01	Rice	plasma membrane	23.41	74.05
CDY15432	Canola	cytosol	71.2	72.3
CDX89963	Canola	cytosol, nucleus, plasma membrane	73.05	71.84
CDY15249	Canola	cytosol, peroxisome, plasma membrane	73.13	71.57
CDY51307	Canola	cytosol, peroxisome, plasma membrane	72.49	71.28
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.34	71.24
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	73.37	71.14
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	73.21	70.98
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	63.07	70.89
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	72.65	70.16
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	71.2	68.98
CDY24379	Canola	plasma membrane	64.04	68.09
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	70.56	68.04
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	65.89	67.57
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	63.4	67.24
CDY58790	Canola	peroxisome	66.13	66.78
GSMUA_Achr1P25070_001	Banana	plasma membrane	48.51	66.56
OQU77362	Sorghum	mitochondrion, plasma membrane	61.46	66.2
CDY51560	Canola	peroxisome	66.13	65.71
KXG32330	Sorghum	plastid	67.1	65.16
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	66.45	64.63
Solyc06g009290.2.1	Tomato	nucleus	72.33	64.21
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	65.0	63.37
TraesCS1A01G081300.1	Wheat	unclear	64.92	63.24
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	64.76	63.09
HORVU1Hr1G017460.3	Barley	plasma membrane	64.6	62.59
CDY35168	Canola	golgi, peroxisome, plasma membrane	54.79	62.42
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	66.53	61.95
CDX84897	Canola	cytosol	5.79	61.02
CDX86437	Canola	cytosol	7.16	59.73
GSMUA_Achr9P16700_001	Banana	plasma membrane	59.69	58.43
CDX86442	Canola	cytosol, mitochondrion, plastid	3.06	55.88
CDX86408	Canola	plasma membrane	45.7	45.92
CDY00109	Canola	plasma membrane	45.62	45.54
CDY65012	Canola	plasma membrane	45.86	45.49
CDY20012	Canola	plasma membrane	45.53	45.17
CDX94395	Canola	plasma membrane	42.64	42.95
CDX93393	Canola	plasma membrane	42.32	42.94
CDY37953	Canola	plasma membrane	42.24	42.86
CDX92739	Canola	plasma membrane	42.24	42.3
CDY27639	Canola	plasma membrane	41.03	41.87
CDX89380	Canola	plasma membrane	42.56	41.49
CDX86445	Canola	plasma membrane	40.87	40.84
CDY04018	Canola	plasma membrane	40.39	40.45
CDX85192	Canola	plasma membrane	41.11	40.27
CDY42770	Canola	golgi, plasma membrane, vacuole	36.2	39.65
CDY46744	Canola	cytosol, peroxisome, plasma membrane	42.16	39.16
CDX79704	Canola	plasma membrane	42.24	39.15
CDX84896	Canola	plasma membrane	32.18	38.06
CDY64952	Canola	peroxisome, plasma membrane, vacuole	27.35	34.52
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	38.54	34.19
CDY24958	Canola	mitochondrion, plasma membrane, plastid	38.29	34.12
CDY07647	Canola	cytosol	38.46	34.12
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	38.46	33.95
CDX76106	Canola	cytosol, golgi, peroxisome	38.21	33.93
CDY65312	Canola	cytosol	38.13	33.88
CDY21871	Canola	endoplasmic reticulum, plasma membrane	1.53	26.39

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	GO:A0A078HJB9	UniProt:A0A078HJB9	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDY37776	ProteinID:CDY37776
ProteinID:CDY37776.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00064711001	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211
PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0004EE158D	SEG:seg	:	:

Description

BnaC04g00490DBnaC04g00490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJB9]

Coordinates

chrLK032408:-:35137..40271

Molecular Weight (calculated)

134315.0 Da

IEP (calculated)

6.329

GRAVY (calculated)

0.061

Length

1243 amino acids

Sequence
(BLAST)

0001: MASESGLNGD SNIVEEVSET KRSRDVEEDK EVKKTEKNNN TEEHEKTKTV PFYKLFAFAD SFDFLLMTLG TLGSIGNGLG FPIMTILFGD LVDAFGENQT
0101: DSNVADKVSK VALKFVWLGI GTLAAAFLQL SGWMISGERQ AARIRSMYLK TILRQDIAFF DVDTNTGEVV GRMSGDTVLI QDAMGEKVGK AIQLLATFVG
0201: GFVIAFIRGW LLTLVMLSSI PLLVMAGAGL AIVIARTASR GQTAYAKAAV VVEQTIGSIR TVASFTGEKQ AISNYNKHLV TAYKAGVIEG GSTGLGLGTL
0301: FLVVFCSYAL AVWYGGKLIL DKGYTGGQVL NIIISVLTGS MSLGQASPCL TAFAAGQAAA YKMFETIERR PDIDSYSTDG KVLDDIKGDI ELKDVYFTYP
0401: ARPDEQIFRG FSLFISSGTT VALVGQSGSG KSTVVSLIER FYDPQAGEVL IDGVNLKEFQ LKWIRSKIGL VSQEPVLFTS SIKDNIAYGK EDATLEEIKA
0501: AAELANASKF VDKLPQGLDT MVGEHGTQLS GGQKQRIAVA RAILKDPRIL LLDEATSALD AESERVVQEA LDRIMVNRTT VVVAHRLSTV RNADTIAVIH
0601: QGKIVEKGSH TELLKDPEGA YSQLIRLQEE KKPEETQAGE RKMSSIESFK QSSFRKSSLG RGNSSRHSFN MFGFPSGIEG NDVVQDQEED DTTEPKTKPK
0701: KVSIRRIAAL NKPEIPVLIL GTISAAANGV ILPIFGILIA SVIKAFFKPP KELKEDTSFW AIIFMVLGFA SVIAYPAQTF FFSIAGCKLV QRIRSMCFEK
0801: VVHMEVGWFD ESEHSSGTIG ARLSADAAAI RGLVGDALAQ MFMKGFSADA KKMYGEASQV ANDAVGSIRT VASFCAEDKV MNMYTKKCEG PMKTGIRQGI
0901: VSGIGFGVSF FVLFASYATS FYVGAKLVDD GKTTFDSVFR VFFALTMAAV AISQSSSLSP DSSKADIAAA SIFGIIDRES KIDPSVESGR VLDTVKGDIE
1001: LRHVSFRYPS RPDVQIFQDL CLSIRAGKTV ALVGESGSGK STVIALLQRF YDPDSGEITL DGVEIKTLRL KWLRQQTGLV SQEPILFNET IRANIAYGKG
1101: GDASESEIVS AAELSNAHGF ISGLQQGYDT MVGERGIQLS GGQKQRVAIA RAIVKDPKVL LLDEATSALD AESERVVQDA LDRVMVNRTT IVVAHRLSTI
1201: KNADVIAVVK NGVIVEKGKH ESLINIKDGV YASLVQLHLT AAS

Best Arabidopsis Sequence Match ( AT2G47000.1 )
(BLAST)

0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS

Arabidopsis Description

ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.