CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68262	Canola	plasma membrane	99.31	99.14
CDY23471	Canola	golgi, plasma membrane	78.56	92.9
CDX68327	Canola	plasma membrane	76.16	91.55
AT1G70940.1	Thale cress	plasma membrane	94.0	85.62
CDY25767	Canola	plasma membrane	83.53	84.99
CDY12491	Canola	plasma membrane	83.19	84.49
Bra016173.1-P	Field mustard	plasma membrane	90.91	83.86
CDY63826	Canola	plasma membrane	79.07	81.88
CDY40380	Canola	plasma membrane	78.22	81.14
CDX91695	Canola	plasma membrane	78.22	79.86
CDY41467	Canola	plasma membrane	78.56	78.42
CDY09501	Canola	plasma membrane	73.76	76.24
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	81.48	73.19
PGSC0003DMT400078330	Potato	golgi, plasma membrane	81.82	72.94
Solyc04g007690.2.1	Tomato	plasma membrane	76.67	72.92
Solyc05g008060.2.1	Tomato	nucleus	81.65	72.89
KRH38202	Soybean	plasma membrane	79.07	72.71
KRH50369	Soybean	plasma membrane	80.79	70.83
KRG89296	Soybean	plasma membrane	80.79	70.72
KRH49577	Soybean	plasma membrane	66.38	69.6
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	56.09	67.56
PGSC0003DMT400015267	Potato	cytosol	52.83	66.38
GSMUA_Achr7P17140_001	Banana	plasma membrane	66.04	66.15
CDX96484	Canola	plasma membrane	60.55	65.98
CDX82059	Canola	golgi, plasma membrane	59.35	65.78
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	68.27	65.57
Os01t0643300-01	Rice	golgi, plasma membrane, vacuole	68.95	65.05
TraesCS3D01G221900.1	Wheat	plasma membrane	65.52	64.75
TraesCS3A01G231500.1	Wheat	plasma membrane	65.52	64.2
CDY47745	Canola	golgi, plasma membrane	63.12	64.11
Zm00001d044083_P001	Maize	plasma membrane	66.04	63.11
EES01159	Sorghum	golgi, plasma membrane	66.55	59.42
CDY11886	Canola	plasma membrane	61.23	57.67
CDY38263	Canola	plasma membrane	57.12	57.61
Zm00001d045219_P001	Maize	plasma membrane	56.95	57.14
TraesCS1D01G422900.1	Wheat	golgi, plasma membrane, vacuole	58.32	57.05
Os05t0576900-01	Rice	golgi, plasma membrane, vacuole	57.63	56.85
TraesCS1B01G445400.1	Wheat	golgi, plasma membrane, vacuole	57.98	56.62
CDY72296	Canola	golgi, plasma membrane	43.91	56.51
CDY20694	Canola	plasma membrane	61.41	56.38
EER89254	Sorghum	golgi, plasma membrane, vacuole	57.8	56.17
TraesCS3B01G260700.1	Wheat	plasma membrane	58.49	55.99
TraesCS1A01G415400.1	Wheat	golgi, plasma membrane, vacuole	57.29	55.76
CDY53978	Canola	plasma membrane	56.78	55.54
CDY69709	Canola	plasma membrane	57.63	55.45
CDX88606	Canola	plasma membrane	60.72	55.05
CDY63766	Canola	golgi, plasma membrane	25.56	50.17
CDX70699	Canola	golgi, plasma membrane, vacuole	29.85	50.0
CDX85565	Canola	plasma membrane	31.05	50.0
CDX69445	Canola	golgi, plasma membrane, vacuole	29.67	49.71
CDY67254	Canola	golgi, plasma membrane, vacuole	29.67	49.71
CDX88341	Canola	plasma membrane	48.2	49.56
CDX87543	Canola	plasma membrane	48.03	49.38
CDX69551	Canola	endoplasmic reticulum, extracellular, vacuole	18.87	49.11
CDX78697	Canola	plasma membrane	30.02	44.42
CDY66594	Canola	plasma membrane	32.08	41.65
HORVU7Hr1G038700.9	Barley	nucleus, plastid	25.56	21.44
CDX85566	Canola	cytosol	2.92	6.16

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	GO:A0A078EA58	InterPro:Auxin_eff_plant	EnsemblPlants:CDX96288	ProteinID:CDX96288
ProteinID:CDX96288.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00102427001	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF36	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI0004EDC5C1	SEG:seg	:	:	:

Description

BnaA07g28990D

Coordinates

chrLK031894:+:124303..127419

Molecular Weight (calculated)

63255.2 Da

IEP (calculated)

8.298

GRAVY (calculated)

0.308

Length

583 amino acids

Sequence
(BLAST)

001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI LMLALLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYAG SLMVQVVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGNDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNNSDF YSMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENSA IASSPRFGYY
301: PGGGGGAKEL HMFVWSSNGS PVSDRAGLNV SDGAPEIRML VPDQSQNGES KALARPASGD FGGERFSFAG REEEGERAKD AENGLNKHAP SSSAELQLKT
401: GLGAAGGGEG SHVKHMPPAS VMTRLILIMV WRKLIRNPNT YSSLIGLIWA LVAFRWHVAM PKIIQQSISI LSDAGLGMAM FSLGLFMALQ PKLIACGNSV
501: ATFAMAVRFL TGPAVMAVAS IAIGLHGDLL RVAIVQAALP QGIVPFVFAK EYNVHPAILS TGVIFGMLIA LPITLVYYIL LGL

Best Arabidopsis Sequence Match ( AT1G70940.1 )
(BLAST)

001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL

Arabidopsis Description

PIN3Auxin efflux carrier component 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Z8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.