Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0023g00320.t01 | Wine grape | plasma membrane | 66.67 | 15.73 |
| Os12t0133800-01 | Rice | peroxisome, plastid | 44.05 | 12.05 |
| VIT_04s0023g00450.t01 | Wine grape | golgi, plasma membrane | 51.19 | 11.91 |
| VIT_14s0108g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 36.9 | 8.68 |
| VIT_05s0062g01120.t01 | Wine grape | plasma membrane | 44.05 | 7.99 |
| VIT_18s0001g15420.t01 | Wine grape | plasma membrane | 45.24 | 6.91 |
| GSMUA_Achr8P09440_001 | Banana | plasma membrane | 44.05 | 6.78 |
| Os11t0137000-01 | Rice | golgi, plasma membrane | 44.05 | 6.68 |
| TraesCS4B01G130100.1 | Wheat | plasma membrane | 42.86 | 6.36 |
| TraesCS4D01G125300.1 | Wheat | plasma membrane | 42.86 | 6.36 |
| TraesCS4A01G188100.1 | Wheat | plasma membrane | 42.86 | 6.34 |
| VIT_17s0000g02420.t01 | Wine grape | plasma membrane | 44.05 | 6.23 |
| VIT_08s0040g01230.t01 | Wine grape | golgi, plasma membrane | 44.05 | 6.2 |
| EES09211 | Sorghum | golgi, plasma membrane | 42.86 | 6.17 |
| GSMUA_Achr2P00910_001 | Banana | golgi, plasma membrane, vacuole | 40.48 | 6.1 |
| VIT_08s0040g01220.t01 | Wine grape | plasma membrane | 42.86 | 6.01 |
| Zm00001d052442_P001 | Maize | plasma membrane | 39.29 | 5.76 |
| VIT_11s0052g00440.t01 | Wine grape | plasma membrane | 42.86 | 5.71 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 41.67 | 5.39 |
| HORVU3Hr1G111420.1 | Barley | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | ProteinID:CBI17651 | ProteinID:CBI17651.3 | UniProt:D7SPS2 | EMBL:FN594959 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009926 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 |
| PANTHER:PTHR31752:SF2 | TMHMM:TMhelix | UniParc:UPI00015CA586 | ArrayExpress:VIT_04s0023g00330 | EnsemblPlantsGene:VIT_04s0023g00330 | EnsemblPlants:VIT_04s0023g00330.t01 |
Description
No Description!
Coordinates
chr4:+:16523767..16527061
Molecular Weight (calculated)
9409.0 Da
IEP (calculated)
9.666
GRAVY (calculated)
0.887
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MAMQQKFIAC GTILTVFRMV LQFIVRPATM VIDTITIGLH GDVLRIAIIQ MAVFPQSITS FIFARENRLH AEVLSLKEFL VSVG
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTA
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTA
Arabidopsis Description
PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.