Factsheet for VIT_08s0040g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01230.t01	Wine grape	golgi, plasma membrane	95.16	95.48
KRH66749	Soybean	plasma membrane	84.97	85.26
PGSC0003DMT400021600	Potato	golgi, plasma membrane	84.14	84.85
Solyc10g078370.1.1	Tomato	golgi, plasma membrane	84.14	84.85
KRG95082	Soybean	plasma membrane	66.28	82.54
PGSC0003DMT400072459	Potato	golgi, plasma membrane	79.13	80.75
Solyc10g080880.1.1	Tomato	golgi, plasma membrane	78.96	80.72
VIT_17s0000g02420.t01	Wine grape	plasma membrane	72.79	73.4
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	69.28	63.94
VIT_11s0052g00440.t01	Wine grape	plasma membrane	62.77	59.68
VIT_14s0108g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	33.72	56.58
VIT_18s0001g15420.t01	Wine grape	plasma membrane	50.75	55.27
VIT_05s0062g01120.t01	Wine grape	plasma membrane	41.24	53.35
VIT_04s0023g00320.t01	Wine grape	plasma membrane	29.38	49.44
VIT_04s0023g00330.t01	Wine grape	extracellular, golgi	6.01	42.86
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	25.04	41.55

Protein Annotations

EntrezGene:100258578	wikigene:100258578	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	ProteinID:CCB57110
ProteinID:CCB57110.1	UniProt:F6HR61	EMBL:FN596008	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009926
GO:GO:0009987	GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EntrezGene:LOC100258578	wikigene:LOC100258578	InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752
PANTHER:PTHR31752:SF14	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0001983BEC	ArrayExpress:VIT_08s0040g01220	EnsemblPlantsGene:VIT_08s0040g01220
EnsemblPlants:VIT_08s0040g01220.t01	RefSeq:XP_002282687	RefSeq:XP_002282687.1	RefSeq:XP_002282693	RefSeq:XP_002282693.1	RefSeq:XP_002282701
RefSeq:XP_002282701.1	RefSeq:XP_010653620.1	SEG:seg	:	:	:

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:F6HR61]

Coordinates

chr8:-:12250088..12253345

Molecular Weight (calculated)

64705.7 Da

IEP (calculated)

9.090

GRAVY (calculated)

0.235

Length

599 amino acids

Sequence
(BLAST)

001: MIAITDLYHV LTSVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIS TNDPYAMNYR FIAADTLQKI IVLVVLAIWS RVSSRGCLEW
101: SITLFSLSTL PNTLVMGIPL LKGMYGEYSG TLMVQIVVLQ CIIWYTLMLF LFEYRGARLL IVEQFPDTAG SIISFRVDSD VISLDGKEPL QTEAEVGEDG
201: KLHVTVRKST SSRSEIFSRR SHGPNSGVSL TPRPSNLTNA EIYSLQSSRN PTPRGSSFNH TDFYSMVNGK NMSNVSPRQS NFGNLTFDEE NGIGGFPNPP
301: RANGVYSQGG GYPAPPSAGI FSPVGGPGAK KKANGADGGK DLHMFVWSSS ASPVSEGGIH VFRGGDYGNE VAGGVLPQTK DYDESRQDEF SFGNRPVANG
401: GDREGAMMSK LGSSSTAELN PKAAAQSKPT SMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLTWSLVSF KWGIEMPAII AKSISILSDA GLGMAMFSLG
501: LFMALQPRII ACGNSIATFA MAVRFLTGPA VMAAASIAVG LRGVLLHIAI VQAALPQGIV PFVFAKEYNV HPDILSTGVI FGMLIALPIT LVYYILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.