Factsheet for VIT_05s0062g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	39.74	51.54
VIT_04s0023g00320.t01	Wine grape	plasma membrane	37.37	48.6
VIT_04s0023g00330.t01	Wine grape	extracellular, golgi	7.99	44.05
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	33.91	43.49
VIT_08s0040g01230.t01	Wine grape	golgi, plasma membrane	53.35	41.37
VIT_08s0040g01220.t01	Wine grape	plasma membrane	53.35	41.24
VIT_18s0001g15420.t01	Wine grape	plasma membrane	48.81	41.09
VIT_17s0000g02420.t01	Wine grape	plasma membrane	52.27	40.74
VIT_11s0052g00440.t01	Wine grape	plasma membrane	53.13	39.05
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	54.43	38.83

Protein Annotations

EntrezGene:100253234	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	ProteinID:CBI39444	ProteinID:CBI39444.3
UniProt:D7U9N0	EMBL:FN596745	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009926	GO:GO:0009987
GO:GO:0010252	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF17	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI00019833BA	ArrayExpress:VIT_05s0062g01120	EnsemblPlantsGene:VIT_05s0062g01120	EnsemblPlants:VIT_05s0062g01120.t01	unigene:Vvi.15750	unigene:Vvi.25720
RefSeq:XP_010650417.1	SEG:seg	:	:	:	:

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:D7U9N0]

Coordinates

chr5:+:19783607..19785843

Molecular Weight (calculated)

51051.9 Da

IEP (calculated)

8.705

GRAVY (calculated)

0.378

Length

463 amino acids

Sequence
(BLAST)

001: MISIKDLYGV LSAVVPLYVT MFLAYASVKW WNVFSPDQCA GINRFVAIFA IPLLSFEVIS RINPYKMDFL FIAADGVSKV LILIILFSWA KFSKRGSLDW
101: TITLFSISTL PNTLVMGIPL LKSMYGDDKE YLIIQAVVLQ CIIWYTLLLF LFEYREARIF ILNKFKDSSV SNSERSGENF GGIQEMIGRN CGGTGAGEDE
201: VVDVVVRTPS NPQTTQNVNK VAPDSRSCLK PTPAGGAAQE DGKEVHLFIW RCGCCSSQGV CGQSVQVCRR EEEIKVQGKT GEDEKPNFLK DQNMDSSTSS
301: AMLKQIMKRV WFKLVRNPNS YASVLGLAWA LASCRWDIKK PQILENSVTI LSNAGLGMAM FSLGLFMALQ SRIIACGNRL AAYGMLVRFL AGPAVMAVAS
401: VAVGLRGTVL RVSIVQAALP QGIVPFVFSR EYNLHPEMLS TAVIFGMIVA LPITILYYVL LGL

Best Arabidopsis Sequence Match ( AT1G23080.2 )
(BLAST)

001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNAGPM
401: NGDYGGEEES ERVKEVPNGL HKLRCNSTAE LNPKEAIETG ETVPVKHMPP ASVMTRLILI MVWRKLIRNP NTYSSLIGLI WALVAFRWDV AMPKIIQQSI
501: SILSDAGLGM AMFSLGESSF YSVSFFR

Arabidopsis Description

PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.