Factsheet for Bra020012.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G00231.1	Bra024548.1-P	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	94.19	31.26
CDY07232	Canola	cytosol, nucleus, plastid	94.19	31.2
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	75.48	24.63
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	48.39	17.61
KRH40762	Soybean	cytosol, plasma membrane, plastid	44.52	14.26
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	44.52	13.97
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	44.52	13.77
PGSC0003DMT400071772	Potato	cytosol	44.52	13.69
KRH00469	Soybean	cytosol	43.87	13.65
GSMUA_Achr8P12020_001	Banana	cytosol	34.19	11.21
Zm00001d027384_P001	Maize	cytosol	32.9	11.16
OQU93372	Sorghum	cytosol	32.9	11.09
TraesCS4B01G353000.2	Wheat	cytosol	30.97	10.11
HORVU4Hr1G085740.6	Barley	cytosol	30.97	10.11
TraesCS4D01G347000.1	Wheat	cytosol	30.97	9.94
TraesCS5A01G522200.1	Wheat	cytosol	30.32	9.73
Os03t0118900-01	Rice	cytosol	29.03	9.72

Protein Annotations

EnsemblPlants:Bra020012.1	EnsemblPlants:Bra020012.1-P	EnsemblPlantsGene:Bra020012	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR13255	SEG:seg	SUPFAM:SSF48371
UniParc:UPI000253E8BC	UniProt:M4DU19	MapMan:35.2	:	:	:

Description

AT4G00231 (E=2e-041) MEE50 | MEE50 (maternal effect embryo arrest 50); binding

Coordinates

chrA06:-:3290045..3290512

Molecular Weight (calculated)

16866.3 Da

IEP (calculated)

5.175

GRAVY (calculated)

0.066

Length

155 amino acids

Sequence
(BLAST)

001: MEASIPEQVI QPLLLASDSS HSLDECLQFL IEASKTDSGR SDLASKADIL PSILALLQLL PYPSSRHHLN LSLKVLRNLC AGETRNQEAF VDHNGSLVIS
101: ELLDSAIGDA ETVRFGLQVL ANVVVMGENR QRDVWLRIGL TGLTAGPDRV SKHCI

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.