Factsheet for TraesCS4D01G347000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT4G00231.1	TraesCS2D01G505300.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G353000.2	Wheat	cytosol	94.41	96.0
HORVU4Hr1G085740.6	Barley	cytosol	92.75	94.32
TraesCS5A01G522200.1	Wheat	cytosol	93.58	93.58
Os03t0118900-01	Rice	cytosol	71.43	74.51
OQU93372	Sorghum	cytosol	66.87	70.22
Zm00001d027384_P001	Maize	cytosol	66.05	69.8
GSMUA_Achr8P12020_001	Banana	cytosol	51.76	52.85
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	38.92	44.13
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	41.82	40.89
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	42.24	40.72
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	39.34	40.69
CDY07232	Canola	cytosol, nucleus, plastid	39.13	40.38
KRH40762	Soybean	cytosol, plasma membrane, plastid	39.75	39.67
PGSC0003DMT400071772	Potato	cytosol	40.99	39.29
KRH00469	Soybean	cytosol	39.96	38.76
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	38.1	38.74
Bra020012.1-P	Field mustard	cytosol	9.94	30.97

Protein Annotations

EnsemblPlants:TraesCS4D01G347000.1	EnsemblPlantsGene:TraesCS4D01G347000	Gene3D:1.25.10.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	InterPro:IPR011989	ncoils:Coil	PANTHER:PTHR13255	PFAM:PF09759
SEG:seg	SUPFAM:SSF48371	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4D:-:500820673..500823097

Molecular Weight (calculated)

52157.3 Da

IEP (calculated)

4.442

GRAVY (calculated)

-0.063

Length

483 amino acids

Sequence
(BLAST)

001: MWRDEGVEDE ETLSAFLEAS KTREGRAALS DALADTLHLL PASPAPLLLL RLRLLRNLLA GDALNQGTFV LLSGPAAVVS AALSLPALSP DLARAALQAL
101: GNAALGGDPH REAVWDALFP GALREFARVR DAGVLDPLCM VLDTCCSGDG GRGRVEELCH EDLGLPVLVE LVATASRLGH KEEWLEWLLF KICVEEEKFE
201: ALFAALDSTD GGESGNGFNA NHAFLMGTLS KCLTERPEEV SVSNSFALHV LNIQKHAAET VDFTCRGSSE LPTGLPGIDV LGYSLVLLKD ICAWEPSSSL
301: QAEPSSSGTE APVDSPLQAE PSSSGTEAPV DSLLQAGLIK RLLKYLGELE PPSTIRKAMA KEQGDQQPAF ATAKVCPYNG YRRDLVAVIA NCLHGRKQVQ
401: DEVRQLNGIM LLLQQCVIDE GNAYLREWGL LAVKYLLEEN EENQKEVSEL QMQEPILTPE VAELGLRVEI DKKTGHPKLV NSS

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.