CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	CDY04768	AT1G22920.1	21798944
AT4G00231.1	CDY21400	AT1G22920.1	21798944
AT4G00231.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	97.65	97.86
Bra020012.1-P	Field mustard	cytosol	31.2	94.19
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	76.5	75.37
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	49.57	54.46
KRH40762	Soybean	cytosol, plasma membrane, plastid	50.85	49.17
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	51.5	48.79
KRH00469	Soybean	cytosol	51.71	48.59
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	51.28	47.9
PGSC0003DMT400071772	Potato	cytosol	50.85	47.22
GSMUA_Achr8P12020_001	Banana	cytosol	42.73	42.28
Zm00001d027384_P001	Maize	cytosol	40.38	41.36
OQU93372	Sorghum	cytosol	40.38	41.09
Os03t0118900-01	Rice	cytosol	39.74	40.17
TraesCS4B01G353000.2	Wheat	cytosol	40.38	39.79
HORVU4Hr1G085740.6	Barley	cytosol	39.74	39.16
TraesCS4D01G347000.1	Wheat	cytosol	40.38	39.13
TraesCS5A01G522200.1	Wheat	cytosol	40.38	39.13

Protein Annotations

EnsemblPlants:CDY07232	EnsemblPlantsGene:GSBRNA2T00123595001	Gene3D:1.25.10.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	InterPro:IPR011989	PANTHER:PTHR13255	PFAM:PF09759	ProteinID:CDY07232
ProteinID:CDY07232.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0004EF34B7	MapMan:35.2	:

Description

BnaCnng02470D

Coordinates

chrLK031975:-:970715..972359

Molecular Weight (calculated)

51818.3 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.022

Length

468 amino acids

Sequence
(BLAST)

001: MEASIPEQVI QPLLLASDSS HSLDECLQFL IEASKTDSGR SDLASKADIL PSILALLQLL PYPSSRHHLN LSLKVLRNLC AGETRNQEAF VDHNGSLVIS
101: ELLDSAIGDA ETVRFGLQVL ANVVVMGENR QRDVWLRFFP ERFLAIAKVR RLETCDPLCM ILYVCFDGSS EIASQLSSDE GLNIIAETMR AVGSVEYYWL
201: KLLVSRLCVE GDCFPGLFSK LANHKDSTFT SEHAFLLSMV SDIVNERLKE VSIPKDTAHF VLGLLSQSVQ VFDFASAETS ELPTGSAVID VMGYSLVVIR
301: DACAGGSIEE LKNDSGGGNV DMLLSSGLIE LLLDLLRKLE PPTTIKKALK QSPTSSGKPC PYRGFRRDIV AAIGNCSYRR KEVQDEIRER DGLLLMLQQC
401: VTDDENPFLR EWGLWCVRNL LEGNEENQKV VAELEMQGSV DVPQLREIGL RVEIDPLTSR PKLVNDTT

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.