Factsheet for Os03t0118900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	Os04t0654700-02	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93372	Sorghum	cytosol	73.22	73.7
Zm00001d027384_P001	Maize	cytosol	71.49	72.43
TraesCS4B01G353000.2	Wheat	cytosol	74.08	72.21
HORVU4Hr1G085740.6	Barley	cytosol	73.87	72.0
TraesCS5A01G522200.1	Wheat	cytosol	74.73	71.64
TraesCS4D01G347000.1	Wheat	cytosol	74.51	71.43
GSMUA_Achr8P12020_001	Banana	cytosol	54.0	52.85
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	41.68	45.31
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	43.41	40.69
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	43.84	40.52
KRH40762	Soybean	cytosol, plasma membrane, plastid	41.68	39.88
CDY07232	Canola	cytosol, nucleus, plastid	40.17	39.74
PGSC0003DMT400071772	Potato	cytosol	43.2	39.68
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	39.96	39.61
KRH00469	Soybean	cytosol	41.68	38.76
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	38.88	37.89
Bra020012.1-P	Field mustard	cytosol	9.72	29.03

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.2	EntrezGene:4331419	ProteinID:AAO15288.1	ProteinID:ABF93674.1	EMBL:AK073382
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	ProteinID:BAF10689.1	ProteinID:BAS82003.1	ProteinID:EAZ25375.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	InterPro:IPR011989	EnsemblPlantsGene:Os03g0118900	EnsemblPlants:Os03t0118900-01	PFAM:PF09759
PANTHER:PTHR13255	UniProt:Q8H050	SUPFAM:SSF48371	UniParc:UPI00000ADC3D	RefSeq:XP_015632269.1	SEG:seg

Description

Armadillo-type fold domain containing protein. (Os03t0118900-01)

Coordinates

chr3:+:1021458..1024531

Molecular Weight (calculated)

50929.1 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.079

Length

463 amino acids

Sequence
(BLAST)

001: MWEAEEIEDE ETLEALLEAS RSAQGRAALS DALADTLHLL PASTHRLLLL RLRLLRNLLA GDDLNQGTFV LLSGPAAVVS SALSSPSDSP DVARAGLQAL
101: GNAALAGEHH RAAVWDALFP GSLLELARVR EKGVLDPLCM VIDTCCSGEG GRGRLEELCH EELGLPILVE IVTTAWQVGH DEEWLEWLLF KICVEEQKFE
201: TLFVALCSRN DAEHSDGDEC KTEFNAKHAY LLGKLSKCLA NRPKEVSVSI SFALDIFNAQ KHAAEIVDFT CRVNSPLPTG HPAIDVLGYS LVLLKDICAW
301: ESPPSDTQAP VDSLMQTGLV KHLLTYLREL EPPSMIRKSM ARGQGDHQPA LGTAKVCPYI GYRRDVVAVI ANCLHRSKKV QDEVRHLDGI ILLLQQCVVD
401: EENPYLREWG LFAVKNLLEG NEENQKEVSG LKMQEAVITP EIADIGLRVE IDKETGHPKL VNN

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.