Factsheet for Solyc02g080650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G00231.1	Solyc11g017300.1.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	94.53	93.21
PGSC0003DMT400071772	Potato	cytosol	90.49	88.69
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	50.61	58.69
KRH40762	Soybean	cytosol, plasma membrane, plastid	51.01	52.07
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	48.79	51.61
CDY07232	Canola	cytosol, nucleus, plastid	48.79	51.5
KRH00469	Soybean	cytosol	51.82	51.41
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	47.57	49.47
Bra020012.1-P	Field mustard	cytosol	13.97	44.52
GSMUA_Achr8P12020_001	Banana	cytosol	42.31	44.19
OQU93372	Sorghum	cytosol	41.09	44.13
Zm00001d027384_P001	Maize	cytosol	40.69	43.98
Os03t0118900-01	Rice	cytosol	40.69	43.41
TraesCS4B01G353000.2	Wheat	cytosol	41.3	42.95
HORVU4Hr1G085740.6	Barley	cytosol	41.3	42.95
TraesCS4D01G347000.1	Wheat	cytosol	40.89	41.82
TraesCS5A01G522200.1	Wheat	cytosol	40.28	41.2

Protein Annotations

EnsemblPlants:Solyc02g080650.2.1	EnsemblPlantsGene:Solyc02g080650.2	Gene3D:1.25.10.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	InterPro:IPR011989	PANTHER:PTHR13255	PFAM:PF09759	SEG:seg
SUPFAM:SSF48371	UniParc:UPI0002769039	UniProt:K4B9T6	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2:+:44832287..44834327

Molecular Weight (calculated)

54862.6 Da

IEP (calculated)

4.968

GRAVY (calculated)

0.106

Length

494 amino acids

Sequence
(BLAST)

001: MDDQIVSELT IPENVAKELL LVSNSSSLET ALDKLIQLSK EGGGRLDLSS KNVVTTVLHL CQSLSSISYR NLLLLSLKVL RNLCAGEIRN QNGFLQQRGV
101: EIVLDVIMSV GLSPDPDCMI IRVGLQLLGN YSVGGGERQC DVWYQLFPHK FLKIARVRNQ EICDPLCMVI YTCCDGTDGL LTDLCSEQGL PILFEILRTA
201: SAVGLKEVWL KLLLSKLCIE GSHISSIFFK LHSYPSVEDN GVVTHVADQF VIEQPYLLSI LSEILNERVE HIVVSHDFAR SIFGILKSAS GVVDFSIRGK
301: SDLPVGSAPI DVLGYSLTLM RDICASDHLS SSKEESSKDV VDVLVSSGLI EFLLNLLRDL EPPTTIRNAM KPDQIKEGTI PSSFRCCPYQ GFRRDIVAIL
401: GNCAYRRRHV QDEIRDKNGI LLLLQQCVID EDNPFLREWG IWCVRNLLEG NAENQGAITD LELQGTVDVP ELVRLGLRVE VDPVTRRTKL VNSS

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.