Factsheet for PGSC0003DMT400042485

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G00231.1	PGSC0003DMT400069203	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	93.21	94.53
PGSC0003DMT400071772	Potato	cytosol	93.21	92.66
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	50.5	59.39
KRH40762	Soybean	cytosol, plasma membrane, plastid	50.5	52.27
KRH00469	Soybean	cytosol	51.7	52.01
CDY07232	Canola	cytosol, nucleus, plastid	47.9	51.28
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	47.7	51.18
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	47.11	49.68
GSMUA_Achr8P12020_001	Banana	cytosol	43.11	45.67
Bra020012.1-P	Field mustard	cytosol	13.77	44.52
Os03t0118900-01	Rice	cytosol	40.52	43.84
Zm00001d027384_P001	Maize	cytosol	39.92	43.76
OQU93372	Sorghum	cytosol	40.12	43.7
TraesCS4B01G353000.2	Wheat	cytosol	41.12	43.37
HORVU4Hr1G085740.6	Barley	cytosol	40.72	42.95
TraesCS4D01G347000.1	Wheat	cytosol	40.72	42.24
TraesCS5A01G522200.1	Wheat	cytosol	40.52	42.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400042485	EnsemblPlantsGene:PGSC0003DMG400016476	EntrezGene:102600352	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold
InterPro:Ataxin-10_domain	ncoils:Coil	PANTHER:PTHR13255	PFAM:PF09759	PGSC:PGSC0003DMG400016476	RefSeq:XP_006348129.1
SEG:seg	SUPFAM:SSF48371	UniParc:UPI000294AD9C	UniProt:M1BD43	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016476]

Coordinates

chr2:+:36449382..36453891

Molecular Weight (calculated)

55751.7 Da

IEP (calculated)

4.815

GRAVY (calculated)

0.127

Length

501 amino acids

Sequence
(BLAST)

001: MDDKVVTVDD QIVAELTIPE NVAKELLLVS NSSSLETALE KLIELAKEEG GRLDLSSKNV VTTVLHLCQS LSSISYRYLL LLSLKVLRNL CAGEIINQNE
101: FLQQRGVEIV VDVIMSVGLT PDPDCMIIRV GLQLLGNYSV GGGERQCDVW YQLFPHKFLK IARVRNQEIC DPLCMVIYTC CDGTDGLLTD LCSEKGLPIL
201: IEILRTASAV GLKEVWLKLL LSKLCIEGSY ISSIFFKLHS YPSVENNGVV THVVDQFVIE QSYLLSTLSE ILNERVEHIV VSHDFARSIF GILKSASGVA
301: DFSIRGKSDL PVGSAPIDVL GYSLTILRDI CASDHMTSSK EESSKDVVDV LVSSGLIEFL LNLLRDLEPP TTIRKAMKQD QIKEGTISSS FRCCPYQGFR
401: RDIVAILGNC AYRRRHVQDE IRDKNGILLL LQQCVIDEDN PFLREWGIWC VRNLLEGNAE NQGAITDLEL QGTVDVPELV RLGLRVEVDP VTRHTKLVNS
501: S

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.