CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	KRH52586	AT1G22920.1	21798944
AT4G00231.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00469	Soybean	cytosol	93.8	91.16
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	52.69	59.86
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	49.38	51.18
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	52.07	51.01
CDY07232	Canola	cytosol, nucleus, plastid	49.17	50.85
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	52.27	50.5
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	48.97	49.89
PGSC0003DMT400071772	Potato	cytosol	51.65	49.6
Bra020012.1-P	Field mustard	cytosol	14.26	44.52
GSMUA_Achr8P12020_001	Banana	cytosol	43.18	44.19
Os03t0118900-01	Rice	cytosol	39.88	41.68
Zm00001d027384_P001	Maize	cytosol	39.05	41.36
OQU93372	Sorghum	cytosol	39.26	41.3
TraesCS4B01G353000.2	Wheat	cytosol	40.08	40.84
HORVU4Hr1G085740.6	Barley	cytosol	39.67	40.42
TraesCS4D01G347000.1	Wheat	cytosol	39.67	39.75
TraesCS5A01G522200.1	Wheat	cytosol	39.05	39.13

Protein Annotations

EMBL:ACUP02006053	EnsemblPlants:KRH40762	EnsemblPlantsGene:GLYMA_09G276500	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	InterPro:IPR011989	PANTHER:PTHR13255	PFAM:PF09759
ProteinID:KRH40762	ProteinID:KRH40762.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI00023C9084	UniProt:I1L722
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:49192961..49195220

Molecular Weight (calculated)

53414.8 Da

IEP (calculated)

6.375

GRAVY (calculated)

0.050

Length

484 amino acids

Sequence
(BLAST)

001: MGGGTAFLEH PISDDILQLL FEVSNSSNLE KSLEILIQNA KSDSGRLELA SKKILPAVLN IVHSLTHASH HHQRNHILSL SFKLLRNLCA GEAANQDSFL
101: ELNGVAVVCS VLRSEAASSG PDHGLVRWGL QVLANVSLAG KQHQCAVWEE LCLDGFVSLA RLGTKETCDP LCMVIYTCCD GNPEWFKRLS SEDGRLVMAE
201: IVRTASSASF GEDWLKLLLS RICLEESQLP VLFSKLQFAD VPKVELTFLL RILSEILNER LKDVTVSKDV ALFVFGIFKK SIGVLEHATR GKSGLPSGFV
301: GVDVLGYSLT ILRDVCAQDG VRGNTEDSND VVDVLLSYGL IVLLLCLLGA LEPPAIIRKG LKRCEKEDGA SCSIKPCPYK GFRRDIVALI GNCVYRRKHA
401: QDEIRHRNGI LLLLQQCVTD EDNPFLREWG IWSVRNMLEG NNENQKVVAE LEIQGSADVP EITSLGLRVE VDQRTRRAKL VNIP

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.