Factsheet for VIT_04s0044g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40762	Soybean	cytosol, plasma membrane, plastid	59.86	52.69
KRH00469	Soybean	cytosol	59.86	51.2
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	58.69	50.61
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	59.39	50.5
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	54.93	50.11
PGSC0003DMT400071772	Potato	cytosol	58.92	49.8
CDY07232	Canola	cytosol, nucleus, plastid	54.46	49.57
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	54.93	49.26
Bra020012.1-P	Field mustard	cytosol	17.61	48.39
GSMUA_Achr8P12020_001	Banana	cytosol	46.95	42.28
OQU93372	Sorghum	cytosol	45.54	42.17
Os03t0118900-01	Rice	cytosol	45.31	41.68
Zm00001d027384_P001	Maize	cytosol	44.6	41.58
TraesCS4B01G353000.2	Wheat	cytosol	44.6	40.0
HORVU4Hr1G085740.6	Barley	cytosol	44.13	39.58
TraesCS4D01G347000.1	Wheat	cytosol	44.13	38.92
TraesCS5A01G522200.1	Wheat	cytosol	44.13	38.92

Protein Annotations

ArrayExpress:VIT_04s0044g01190	EMBL:FN596506	EnsemblPlants:VIT_04s0044g01190.t01	EnsemblPlantsGene:VIT_04s0044g01190	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	PANTHER:PTHR13255	PFAM:PF09759	ProteinID:CCB60418	ProteinID:CCB60418.1
SEG:seg	SUPFAM:SSF48371	UniParc:UPI00021094AB	UniProt:F6I0F2	MapMan:35.2	:

Description

No Description!

Coordinates

chr4:-:22596896..22600661

Molecular Weight (calculated)

47474.5 Da

IEP (calculated)

5.324

GRAVY (calculated)

0.011

Length

426 amino acids

Sequence
(BLAST)

001: MLKFSLPENI LQPLFSVSNS STLDETLELL IEASKTPGGR LDLGSKNILP VVLQLSQSLS YPSGHDILLL SLKLLRNLCA GEMTNQNLFI EQNGVKAVST
101: ILLSFVGLDS DSDYGIIRMG LQLLGNVSLA GERHQRAVWH HFFPAGFLEI ARVRTLETSD PLCMVIYTCF DQSHEFITEI CGDQGLPILA EIVRTASTVG
201: FEEDWLKLLL SRICLEESHF PMLFSKLCPV GTSGNYERSN AINVLKYSLT ILKEICARDA QKSSNEHGSV DVVDLLVSSG LLELLLCLLR DLEPPAIIRK
301: AIKQGENQDG AASYSPKHYP YRGFRRDLVA VIGNCAYRRK HVQNEIRERN GILLLLQQCV TDEENQFLRE WGIWCVRNLL EGNVENQRVV AELELQGSVD
401: VPEIAGLGLR VEVDQKTGRA KLVNVS

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.