Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00231.1 | KRH52586 | AT1G22920.1 | 21798944 |
| AT4G00231.1 | KRH61926 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40762 | Soybean | cytosol, plasma membrane, plastid | 91.16 | 93.8 |
| VIT_04s0044g01190.t01 | Wine grape | cytosol, nucleus, plastid | 51.2 | 59.86 |
| Solyc02g080650.2.1 | Tomato | cytosol, nucleus, peroxisome | 51.41 | 51.82 |
| Bra037327.1-P | Field mustard | cytosol, nucleus, plastid | 48.59 | 51.82 |
| CDY07232 | Canola | cytosol, nucleus, plastid | 48.59 | 51.71 |
| PGSC0003DMT400042485 | Potato | cytosol, nucleus, vacuole | 52.01 | 51.7 |
| AT4G00231.1 | Thale cress | cytosol, nucleus, peroxisome | 49.2 | 51.58 |
| PGSC0003DMT400071772 | Potato | cytosol | 51.41 | 50.79 |
| GSMUA_Achr8P12020_001 | Banana | cytosol | 42.97 | 45.24 |
| Bra020012.1-P | Field mustard | cytosol | 13.65 | 43.87 |
| Os03t0118900-01 | Rice | cytosol | 38.76 | 41.68 |
| TraesCS4B01G353000.2 | Wheat | cytosol | 39.56 | 41.47 |
| Zm00001d027384_P001 | Maize | cytosol | 37.55 | 40.92 |
| OQU93372 | Sorghum | cytosol | 37.55 | 40.65 |
| HORVU4Hr1G085740.6 | Barley | cytosol | 38.76 | 40.63 |
| TraesCS4D01G347000.1 | Wheat | cytosol | 38.76 | 39.96 |
| TraesCS5A01G522200.1 | Wheat | cytosol | 38.35 | 39.54 |
Protein Annotations
| EMBL:ACUP02011451 | EnsemblPlants:KRH00469 | EnsemblPlantsGene:GLYMA_18G215400 | EntrezGene:100795092 | Gene3D:1.25.10.10 | GO:GO:0003674 |
| GO:GO:0005488 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Ataxin-10_domain | InterPro:IPR011989 | PANTHER:PTHR13255 |
| PFAM:PF09759 | ProteinID:KRH00469 | ProteinID:KRH00469.1 | ProteinID:KRH00470.1 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI000233E9A0 | UniProt:I1N3A3 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:50255282..50260137
Molecular Weight (calculated)
55525.6 Da
IEP (calculated)
5.687
GRAVY (calculated)
-0.062
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDTAFLEH PISEDTLQLL FEASNSSNME KSLEILIQNA KSDSGRLELA SKRILPAVLN IVHSLTHASH HHHHQHNHIL CLSFKLLRNL CAGEAANQDS
101: FLELDGVAVV CSVLRSEAAC SGPDHGLVRW GLQVLANVSL AGKQHQCAIW KELYLDGFVS LARLHTKETC DPLCMVIYTC CDGNPEWFKR LSSEDGWFVM
201: AEIVRTASSA SFGEDWLKLL LSRICLEESQ LPVLFSKLQF ADVPKVEVAE SKDDHFSFEQ AFLLRILSEI LNERHKDVTV SKDVALFVFG IFKNSIGVLE
301: HATRGKSGLP SGFVGVDVLG YSLTILRDIC AQDGVRGNTE DSNDVVDALL SYGLIELLLY LLEALEPPAI IRKGLKQCEN QDGASCSFKP CPYKGFRRDI
401: VALIGNCVYR RKHAQDEIRH RNGILLLLQQ CVTDEDNPFL REWGIWSVRN MLEGNDENQK VVAELEIQGS ADVPEITSLG LRVEVDQRTR RAKLVNIP
101: FLELDGVAVV CSVLRSEAAC SGPDHGLVRW GLQVLANVSL AGKQHQCAIW KELYLDGFVS LARLHTKETC DPLCMVIYTC CDGNPEWFKR LSSEDGWFVM
201: AEIVRTASSA SFGEDWLKLL LSRICLEESQ LPVLFSKLQF ADVPKVEVAE SKDDHFSFEQ AFLLRILSEI LNERHKDVTV SKDVALFVFG IFKNSIGVLE
301: HATRGKSGLP SGFVGVDVLG YSLTILRDIC AQDGVRGNTE DSNDVVDALL SYGLIELLLY LLEALEPPAI IRKGLKQCEN QDGASCSFKP CPYKGFRRDI
401: VALIGNCVYR RKHAQDEIRH RNGILLLLQQ CVTDEDNPFL REWGIWSVRN MLEGNDENQK VVAELEIQGS ADVPEITSLG LRVEVDQRTR RAKLVNIP
001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT
Arabidopsis Description
MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.