Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G353000.2 | Wheat | cytosol | 94.95 | 94.95 |
| TraesCS4D01G347000.1 | Wheat | cytosol | 94.32 | 92.75 |
| TraesCS5A01G522200.1 | Wheat | cytosol | 92.84 | 91.3 |
| Os03t0118900-01 | Rice | cytosol | 72.0 | 73.87 |
| OQU93372 | Sorghum | cytosol | 67.79 | 70.0 |
| Zm00001d027384_P001 | Maize | cytosol | 67.16 | 69.8 |
| GSMUA_Achr8P12020_001 | Banana | cytosol | 52.63 | 52.85 |
| VIT_04s0044g01190.t01 | Wine grape | cytosol, nucleus, plastid | 39.58 | 44.13 |
| Solyc02g080650.2.1 | Tomato | cytosol, nucleus, peroxisome | 42.95 | 41.3 |
| PGSC0003DMT400042485 | Potato | cytosol, nucleus, vacuole | 42.95 | 40.72 |
| Bra037327.1-P | Field mustard | cytosol, nucleus, plastid | 39.79 | 40.47 |
| CDY07232 | Canola | cytosol, nucleus, plastid | 39.16 | 39.74 |
| KRH40762 | Soybean | cytosol, plasma membrane, plastid | 40.42 | 39.67 |
| PGSC0003DMT400071772 | Potato | cytosol | 41.68 | 39.29 |
| KRH00469 | Soybean | cytosol | 40.63 | 38.76 |
| AT4G00231.1 | Thale cress | cytosol, nucleus, peroxisome | 38.53 | 38.53 |
| Bra020012.1-P | Field mustard | cytosol | 10.11 | 30.97 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G085740.6 | EnsemblPlantsGene:HORVU4Hr1G085740 | Gene3D:1.25.10.10 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:Ataxin-10_domain | InterPro:IPR011989 | ncoils:Coil | PANTHER:PTHR13255 | PFAM:PF09759 |
| SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0002968D0A | UniProt:M0XJJ0 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr4H:-:632310430..632313768
Molecular Weight (calculated)
51646.7 Da
IEP (calculated)
4.462
GRAVY (calculated)
-0.069
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRDEGVEDE ETLRALLEAS RTREGRAALS DALADTLHLL PASPAPLLLL RLRLLRNLVA GDALNQGTFV LLSGPAAVVS VALSLPSLSP DLARAALQAL
101: GNAALGGDRH REAVWDALFP GALRDFARVR DADVLDPLCM VLDTCCSGDG GRGRVEELCH EDVGLPVLVE LVTTASRLGH KEEWLEWLLF KICVEEEKFE
201: ALFAALDSTD GSESGNGFSA NHAFLMGTLS KCLTERPEEV SISNSFALHV FNIQKHAAET VDFTCRGSSA LPTGCPTIDV LGYSLVLLKD ICAWDPSSSE
301: TEAPVDSLLQ ADPSSSGTES PVDSLLQAGL VKRLLKYLGE LEPPSTIRKA MAKEQGDQQQ ALATAKVCPY NGYRRDLVAV IANCLQGRKQ VQDEVRQLNG
401: IMLLLQQCVI DEGNAYLREW GLLAVKYLLE ENEENQKEVS ELQMQEPILT PEVAELGLRV EIDKKTGHPK LVNSS
101: GNAALGGDRH REAVWDALFP GALRDFARVR DADVLDPLCM VLDTCCSGDG GRGRVEELCH EDVGLPVLVE LVTTASRLGH KEEWLEWLLF KICVEEEKFE
201: ALFAALDSTD GSESGNGFSA NHAFLMGTLS KCLTERPEEV SISNSFALHV FNIQKHAAET VDFTCRGSSA LPTGCPTIDV LGYSLVLLKD ICAWDPSSSE
301: TEAPVDSLLQ ADPSSSGTES PVDSLLQAGL VKRLLKYLGE LEPPSTIRKA MAKEQGDQQQ ALATAKVCPY NGYRRDLVAV IANCLQGRKQ VQDEVRQLNG
401: IMLLLQQCVI DEGNAYLREW GLLAVKYLLE ENEENQKEVS ELQMQEPILT PEVAELGLRV EIDKKTGHPK LVNSS
001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT
Arabidopsis Description
MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.