Factsheet for Zm00001d027384_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93372	Sorghum	cytosol	91.25	90.65
Os03t0118900-01	Rice	cytosol	72.43	71.49
HORVU4Hr1G085740.6	Barley	cytosol	69.8	67.16
TraesCS4B01G353000.2	Wheat	cytosol	69.58	66.95
TraesCS4D01G347000.1	Wheat	cytosol	69.8	66.05
TraesCS5A01G522200.1	Wheat	cytosol	69.58	65.84
GSMUA_Achr8P12020_001	Banana	cytosol	50.98	49.26
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	41.58	44.6
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	43.98	40.69
CDY07232	Canola	cytosol, nucleus, plastid	41.36	40.38
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	41.14	40.26
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	43.76	39.92
PGSC0003DMT400071772	Potato	cytosol	43.11	39.09
KRH40762	Soybean	cytosol, plasma membrane, plastid	41.36	39.05
KRH00469	Soybean	cytosol	40.92	37.55
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	38.95	37.47
Bra020012.1-P	Field mustard	cytosol	11.16	32.9

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100276840	MapMan:35.2	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Ataxin-10_domain
UniProt:B6TJF5	EMBL:BT061972	ncoils:Coil	EMBL:EU965120	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
InterPro:IPR011989	ProteinID:ONL92976.1	PFAM:PF09759	PANTHER:PTHR13255	SUPFAM:SSF48371	UniParc:UPI000182D8C5
EnsemblPlantsGene:Zm00001d027384	EnsemblPlants:Zm00001d027384_P001	EnsemblPlants:Zm00001d027384_T001	SEG:seg	:	:

Description

ARM repeat superfamily protein

Coordinates

chr1:+:4115013..4117719

Molecular Weight (calculated)

50508.5 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.116

Length

457 amino acids

Sequence
(BLAST)

001: MSPSDDGEET LAALIELSRT PEGREGLTDV LIDTLFLLPA SPPRLLLLRL RLLRNLLAGD ELNHYAFIEH SGPAAVAASV LSFPSLAPDV ARAALQALGN
101: AALAGELHRD AVWQALFPEA LRVFAGLRDQ GVLDPLCMVL DTCCGGEGGR GRLQELCHEE LGLPILVQAV TTASQVEHKE EWLEWLLFKV CAEEQKFESL
201: FYALCSANDV GEYNAKHIFL LDTLSRCLNS HPEEVTVSDS FAHDVFNLHK HAAETVNFTY RGTSPLPTGH PAIDVLGYTL QLLRDICAWE STSADTQRPV
301: DSLLQAGFVK RLLRYLGELE PPSTIRKSMA GAGGQGDNHP ALENAKVCPY IGYRRDLVAV IANCLHRRKK VQDEIRQLDG IMLLLQQCVI DEDNPYLREW
401: GLLAVKNLLE ENEENQKEVS ELEMQKPVIT PEIANIGLKV EIDKETGRPK LVNTSDT

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.