Factsheet for GSMUA_Achr8P12020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	GSMUA_Achr10P...	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0118900-01	Rice	cytosol	52.85	54.0
TraesCS4B01G353000.2	Wheat	cytosol	52.85	52.63
HORVU4Hr1G085740.6	Barley	cytosol	52.85	52.63
OQU93372	Sorghum	cytosol	50.53	51.96
TraesCS4D01G347000.1	Wheat	cytosol	52.85	51.76
TraesCS5A01G522200.1	Wheat	cytosol	52.64	51.55
Zm00001d027384_P001	Maize	cytosol	49.26	50.98
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	42.28	46.95
KRH40762	Soybean	cytosol, plasma membrane, plastid	44.19	43.18
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	45.67	43.11
KRH00469	Soybean	cytosol	45.24	42.97
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	42.28	42.83
CDY07232	Canola	cytosol, nucleus, plastid	42.28	42.73
PGSC0003DMT400071772	Potato	cytosol	45.45	42.66
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	44.19	42.31
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	41.86	41.68
Bra020012.1-P	Field mustard	cytosol	11.21	34.19

Protein Annotations

EnsemblPlants:GSMUA_Achr8P12020_001	EnsemblPlants:GSMUA_Achr8T12020_001	EnsemblPlantsGene:GSMUA_Achr8G12020_001	Gene3D:1.25.10.10	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	InterPro:IPR011989	PANTHER:PTHR13255	PFAM:PF09759
SEG:seg	SUPFAM:SSF48371	UniParc:UPI000296900C	UniProt:M0TPQ5	MapMan:35.2	:

Description

Putative Ataxin-10 [Source:GMGC_GENE;Acc:GSMUA_Achr8G12020_001]

Coordinates

chr8:+:8749822..8752041

Molecular Weight (calculated)

51686.0 Da

IEP (calculated)

4.824

GRAVY (calculated)

0.036

Length

473 amino acids

Sequence
(BLAST)

001: MENDRRTAGV EEDESDEALE FLLEASKTPG GRAHLASTGA LAAALRRVSS DTSSALLPSL RLVRNLCAGD AVHQDAFVEL GGPDRIASVL LSTPPASPDV
101: ARVALQAIGN LACGGEAQRS AVWARFFPSL FLAAARYRDP AVCDPLCMVL DTCCSSEGGH RRLAELCETK TGLPIILEIV TTACRAGHQE EWLDWLLCKV
201: CIEEAYLSRL FQGLASPSTD NSIDAQCRYS FFTREQAFLL GMLSEYLSNR PKDVSMISSP FALEVLKVLD IASAIVDFSS RGSSDVPTGF PAIDVLGYSL
301: TILRHICAWE NDIAHATEAP VDLLLSAGLL QLLLHLLGEL EPPAIIRKSM TNADHFIQSS TALKVCPYKG FRRDLVSIIG NCLHGRKQVQ VEIRQQNAIP
401: LLLQQCVVDE DNPFLREWGL WSMRNLLEGN PENQHEVAQL QLQEPVNTPE IAGIGLRVEI DEKTGHPKLV NIV

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.