CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027384_P001	Maize	cytosol	90.65	91.25
Os03t0118900-01	Rice	cytosol	73.7	73.22
HORVU4Hr1G085740.6	Barley	cytosol	70.0	67.79
TraesCS4B01G353000.2	Wheat	cytosol	70.0	67.79
TraesCS4D01G347000.1	Wheat	cytosol	70.22	66.87
TraesCS5A01G522200.1	Wheat	cytosol	69.78	66.46
GSMUA_Achr8P12020_001	Banana	cytosol	51.96	50.53
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	42.17	45.54
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	44.13	41.09
CDY07232	Canola	cytosol, nucleus, plastid	41.09	40.38
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	40.87	40.26
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	43.7	40.12
KRH40762	Soybean	cytosol, plasma membrane, plastid	41.3	39.26
PGSC0003DMT400071772	Potato	cytosol	42.83	39.09
KRH00469	Soybean	cytosol	40.65	37.55
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	38.7	37.47
Bra020012.1-P	Field mustard	cytosol	11.09	32.9

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.2	EntrezGene:8059475	UniProt:A0A1Z5SBT0	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Ataxin-10_domain	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0007275
GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	InterPro:IPR011989	EnsemblPlants:OQU93372
ProteinID:OQU93372	ProteinID:OQU93372.1	PFAM:PF09759	PANTHER:PTHR13255	EnsemblPlantsGene:SORBI_3001G530000	SUPFAM:SSF48371
UniParc:UPI0001A83249	RefSeq:XP_002468627.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:79383074..79386144

Molecular Weight (calculated)

50714.5 Da

IEP (calculated)

4.546

GRAVY (calculated)

-0.146

Length

460 amino acids

Sequence
(BLAST)

001: MSPSDDGEET LAALIEASRT PEGREGLSDV LDDTLFLLPA SPSRLLLLRL RLLRNLLAGH ELNQYAFIER CGPAAVAASV LSFPSLAPDV ARAALQALGN
101: AALAGEFHRN AVWEALFPEV LQEFAGLRDQ GVLDPLCMVL DTCCGGEGGR GRLEELCHEE LGLPILVQVV TTASQVGHKE EWLEWLLFKV CVEEQKFESL
201: FYALCSTNDV EHTDSGEYNA KHVFLLGTLS RCLNSHPKEV TVSDGFAHDV FNLHKHAAET VNFTHRGTSP LPTGSPAIDV LGYTLQLLRD ICAWESTSSD
301: TQRPVDSLLQ TGFVQRLLRY LGELEPPSTI RKSMAGGQGD NHPALENAKV CPYIGYRRDL IAVIANCLNG RKKVQDEIRQ LGGIMLLLQQ CVIDEDNPYL
401: REWGLLAVKN LLEENEENQK EVSELEMQEP VITPEIANIG LKVEIDKETG RPKLVNTSDT

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.