Factsheet for PGSC0003DMT400071772

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00231.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G00231.1	PGSC0003DMT400069203	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042485	Potato	cytosol, nucleus, vacuole	92.66	93.21
Solyc02g080650.2.1	Tomato	cytosol, nucleus, peroxisome	88.69	90.49
VIT_04s0044g01190.t01	Wine grape	cytosol, nucleus, plastid	49.8	58.92
KRH40762	Soybean	cytosol, plasma membrane, plastid	49.6	51.65
KRH00469	Soybean	cytosol	50.79	51.41
Bra037327.1-P	Field mustard	cytosol, nucleus, plastid	47.22	50.96
CDY07232	Canola	cytosol, nucleus, plastid	47.22	50.85
AT4G00231.1	Thale cress	cytosol, nucleus, peroxisome	46.83	49.68
GSMUA_Achr8P12020_001	Banana	cytosol	42.66	45.45
Bra020012.1-P	Field mustard	cytosol	13.69	44.52
Os03t0118900-01	Rice	cytosol	39.68	43.2
Zm00001d027384_P001	Maize	cytosol	39.09	43.11
OQU93372	Sorghum	cytosol	39.09	42.83
TraesCS4B01G353000.2	Wheat	cytosol	39.48	41.89
HORVU4Hr1G085740.6	Barley	cytosol	39.29	41.68
TraesCS4D01G347000.1	Wheat	cytosol	39.29	40.99
TraesCS5A01G522200.1	Wheat	cytosol	38.89	40.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400071772	EnsemblPlantsGene:PGSC0003DMG402027917	EntrezGene:102599694	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Ataxin-10_domain	InterPro:IPR011989	PANTHER:PTHR13255	PFAM:PF09759
PGSC:PGSC0003DMG402027917	RefSeq:XP_006366476.1	RefSeq:XP_006366477.1	RefSeq:XP_006366478.1	RefSeq:XP_006366480.1	SEG:seg
SUPFAM:SSF48371	UniParc:UPI00029491DE	UniProt:M1CP99	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402027917]

Coordinates

chr4:-:52018569..52023374

Molecular Weight (calculated)

56289.3 Da

IEP (calculated)

4.675

GRAVY (calculated)

0.146

Length

504 amino acids

Sequence
(BLAST)

001: MDDKVVPELT VDDKIVAEVT IPENVAKELL LVSNSSSLET ALEKLIELAK EEGGRLDLSS KNVVTTVLHL CQSLSSISYR QLLLSSLKVL RNLCAGEIRN
101: QNEFLQQRGV EIVVDVITSV GLTPDPDCMI IRVGLQLLGN YSVGGGERQC DVWYQLFPHK FLKIARVRSW EICDPLCMVI YTCCDGTDGL LTDLCSEQGL
201: PILIEILRTA SAVDRKEVWL KLLLSKLCIE GSYISSIFFK LHSFPSIQNN GVVTHATDQF VIEQPYLLSI LSEIVNDQIE HIVVSHDFAL SIFGILKSAF
301: VVVDFSIRGK SDLPVGFAPI DVLGYSLTIL RDICASDHMT SSKEESSKDV VDVLVSSGLI EFLLNLLRDL EPPTTIRKAM KQDQITEGII SSSFRCCPYQ
401: GFRRDIVSII GNCAYRRRYV QDEIRDKNGI LLLLQQCVID EDNPFLREWG IWCVRNLLEG NAENQGAITD LELQGTVDVP ELVRLGLRVE VDPVTRRTKL
501: VNAS

Best Arabidopsis Sequence Match ( AT4G00231.1 )
(BLAST)

001: MEASLPEEVL QPLLHASDLS YSLEDCLKFL LESSKTDSGR SDLASKSILP SILRLLQLLP YPSSRHYLNL SLKVLRNLCA GEVSNQNSFV DHDGSAIVSD
101: LLDSAIADFE TVRFGLQVLA NVVLFGEKRQ RDVWLRFYPE RFLSIAKIRK RETFDPLCMI LYTCVDGSSE IASELCSCQG LTIIAETLRT SSSVGSVEDY
201: WLKLLVSRIC VEDGYFLKLF SKLYEDAENE IFSSEQAFLV RMVSDIANER IGKVSIPKDT ACSILGLFRQ SVDVFDFVSG ERSELPTGST IVDVMGYSLV
301: IIRDACAGGR LEELKEDNKD SGDTVELLLS SGLIELLLDL LSKLDPPTTI KKALNQSPSS SSSSLKPCPY RGFRRDIVSV IGNCAYRRKE VQDEIRERDG
401: LFLMLQQCVT DDENPFLREW GLWCIRNLLE GNPENQEVVA ELEIKGSVDV PQLREIGLRV EIDPKTARPK LVNDT

Arabidopsis Description

MEE50MEE50 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E4]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.