Factsheet for Bra007407.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71939	Canola	nucleus, plastid	95.22	92.69
Bra003346.1-P	Field mustard	nucleus	82.94	79.41
AT3G58630.1	Thale cress	nucleus	79.86	72.9
GSMUA_Achr1P11500_001	Banana	nucleus	41.64	49.39
KRH27047	Soybean	nucleus	49.83	47.56
GSMUA_Achr5P09160_001	Banana	nucleus	40.61	47.22
KRH22283	Soybean	nucleus	49.15	47.06
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	41.64	46.92
GSMUA_Achr9P06410_001	Banana	nucleus	41.98	45.56
Solyc12g010890.1.1	Tomato	nucleus	47.44	43.03
GSMUA_Achr1P27460_001	Banana	nucleus	37.2	42.75
Bra034866.1-P	Field mustard	nucleus	35.49	39.85
Bra009119.1-P	Field mustard	nucleus	32.42	37.85
Bra034165.1-P	Field mustard	nucleus	34.81	36.96
VIT_12s0028g02150.t01	Wine grape	cytosol	43.69	36.89
HORVU3Hr1G061870.1	Barley	nucleus	38.91	36.08
TraesCS3B01G305100.1	Wheat	nucleus	39.25	36.05
TraesCS3A01G271400.1	Wheat	nucleus	38.91	35.85
TraesCS3D01G271000.1	Wheat	nucleus	38.91	35.85
Os05t0560600-01	Rice	nucleus	41.64	35.26
PGSC0003DMT400020194	Potato	plastid	46.08	35.25
Zm00001d011571_P001	Maize	cytosol	37.54	34.92
EES18672	Sorghum	nucleus	41.3	34.87
Zm00001d038994_P001	Maize	cytosol	40.61	34.69
Zm00001d043902_P001	Maize	nucleus	37.54	34.59
EES03423	Sorghum	cytosol	37.2	34.38
TraesCS1A01G392300.1	Wheat	nucleus	41.3	34.28
TraesCS1D01G400500.1	Wheat	nucleus	40.96	33.99
TraesCS1B01G420500.1	Wheat	nucleus	40.96	33.71
PGSC0003DMT400052607	Potato	nucleus, plastid	45.39	33.5
Os01t0674000-01	Rice	nucleus	36.86	32.53
Zm00001d030350_P001	Maize	nucleus	23.21	32.38
Solyc07g055100.2.1	Tomato	nucleus, plastid	45.05	30.77
Bra037960.1-P	Field mustard	nucleus, plastid	30.72	29.9
Bra021534.1-P	Field mustard	nucleus, plastid	31.4	29.68
Bra021536.1-P	Field mustard	nucleus	30.38	29.09
Bra030909.1-P	Field mustard	nucleus	11.95	27.34
Bra014370.1-P	Field mustard	nucleus	31.06	27.16
Bra001951.1-P	Field mustard	nucleus	21.16	18.29

Protein Annotations

EnsemblPlants:Bra007407.1	EnsemblPlants:Bra007407.1-P	EnsemblPlantsGene:Bra007407	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF2
PFAM:PF13837	SEG:seg	UniParc:UPI0002542E46	UniProt:M4CT65	MapMan:15.5.20	:

Description

AT3G58630 (E=1e-051) | transcription factor

Coordinates

chrA09:-:29038483..29039364

Molecular Weight (calculated)

32524.4 Da

IEP (calculated)

10.351

GRAVY (calculated)

-0.770

Length

293 amino acids

Sequence
(BLAST)

001: MKHAVNGSFS PGSSRPSPST LPREDCWSEE ATFTLIQAWG SRYVNLSRGS LRQNHWQEVA NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK
101: VEKARASGAA AGSGGYVSTW PFFSDLDDLL GETFPTSSAT PSLPMTVVPV PVAPRSAIPR RPAPAPAIMR IGGENLLGYR GNLNTFAAAA AAAASSPAYE
201: DDSDGSRSRS SGGGKRKREE KQGYKEVAEA IERLGEIYER VEERKRKEMV ELEKQRMRFA KELECHRMQL FTEMRVRLHK LRRTKGPTSS GET

Best Arabidopsis Sequence Match ( AT3G58630.2 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.