Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70144 | Canola | cytosol | 93.23 | 93.6 |
| AT5G05550.2 | Thale cress | nucleus | 66.53 | 67.07 |
| Bra034866.1-P | Field mustard | nucleus | 62.95 | 60.54 |
| Bra034165.1-P | Field mustard | nucleus | 62.15 | 56.52 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 44.22 | 43.7 |
| Solyc06g051120.2.1 | Tomato | nucleus | 43.82 | 42.97 |
| PGSC0003DMT400077199 | Potato | cytosol | 44.22 | 40.66 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 39.84 | 37.59 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 37.85 | 32.42 |
| Bra003346.1-P | Field mustard | nucleus | 38.65 | 31.7 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 32.67 | 27.24 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 31.08 | 25.16 |
| Bra014370.1-P | Field mustard | nucleus | 33.07 | 24.78 |
| Bra030909.1-P | Field mustard | nucleus | 12.35 | 24.22 |
| Bra021536.1-P | Field mustard | nucleus | 29.48 | 24.18 |
| Bra001951.1-P | Field mustard | nucleus | 23.11 | 17.11 |
Protein Annotations
| EnsemblPlants:Bra009119.1 | EnsemblPlants:Bra009119.1-P | EnsemblPlantsGene:Bra009119 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF35 | PFAM:PF13837 | SEG:seg |
| UniParc:UPI0002544C47 | UniProt:M4CY22 | MapMan:15.5.20 | : | : | : |
Description
AT5G05550 (E=2e-078) | transcription factor
Coordinates
chrA10:-:15309912..15310667
Molecular Weight (calculated)
29222.7 Da
IEP (calculated)
8.776
GRAVY (calculated)
-1.002
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: METTTPPPPP AKPWQPHSTV SHRQPSGRED WWTEDATATL LQAWGHRYVR LNFGNLRQND WKQVADAVNS SHGNGRPKTD TQCKSRIDTL KKKYKAEKAK
101: LSPSAWRFFD RLDVLIGPVS KKPAEEVVKL ETSEPYLSLT GNKHRESSLE DDDEDEAGDW GFVSRKYPRL EEGDLSEESA CKELARTIVK LGEVYERVEC
201: RKQKMMIELE KQRMEVVKEL ELKRINMLME MQLELEKSKN RKRERVVQVR T
101: LSPSAWRFFD RLDVLIGPVS KKPAEEVVKL ETSEPYLSLT GNKHRESSLE DDDEDEAGDW GFVSRKYPRL EEGDLSEESA CKELARTIVK LGEVYERVEC
201: RKQKMMIELE KQRMEVVKEL ELKRINMLME MQLELEKSKN RKRERVVQVR T
001: METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKKNSH
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKKNSH
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:F4K0Q7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.