Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015729 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11100.1 | PGSC0003DMT400015729 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g051120.2.1 | Tomato | nucleus | 92.31 | 98.44 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 51.65 | 55.51 |
| AT3G11100.1 | Thale cress | nucleus | 44.69 | 49.0 |
| AT5G05550.2 | Thale cress | nucleus | 43.59 | 47.79 |
| CDY36316 | Canola | nucleus | 42.49 | 46.03 |
| CDY00995 | Canola | nucleus | 42.49 | 45.31 |
| Bra034866.1-P | Field mustard | nucleus | 42.86 | 44.83 |
| CDX70144 | Canola | cytosol | 40.66 | 44.4 |
| Bra009119.1-P | Field mustard | nucleus | 40.66 | 44.22 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 41.39 | 42.48 |
| Bra034165.1-P | Field mustard | nucleus | 42.86 | 42.39 |
| PGSC0003DMT400026432 | Potato | cytosol | 40.66 | 38.41 |
| CDX98849 | Canola | cytosol | 42.49 | 37.78 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 39.56 | 28.95 |
| PGSC0003DMT400020194 | Potato | plastid | 39.56 | 28.2 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 37.0 | 25.44 |
| PGSC0003DMT400080593 | Potato | nucleus | 31.14 | 22.73 |
| PGSC0003DMT400070593 | Potato | nucleus | 27.11 | 21.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400077199 | EnsemblPlantsGene:PGSC0003DMG400030023 | EntrezGene:102584643 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF34 |
| PFAM:PF13837 | PGSC:PGSC0003DMG400030023 | SEG:seg | UniParc:UPI000296E76A | UniProt:M1CY12 | MapMan:15.5.20 |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030023]
Coordinates
chr6:+:29588494..29589969
Molecular Weight (calculated)
31290.8 Da
IEP (calculated)
9.586
GRAVY (calculated)
-0.907
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MENQTATQNT SRPHAGGRED CWSEGATETL IEAWGDRYLR LNRGNLRQKD WKEVAYSVNS RQNGVKPQRT DVQCKNRIDT LKKKYKLEKN KSTPSKWPFY
101: NRLDYLIATN NVSASPCNRR PPASISLAVK EKISPDSNFG ALNYSGGSSR LNSSGSNDSS HDDLAFGSGE RKNKMEYVGL SEDTTAFKEL ARAILRFGEI
201: YERIESSKQQ QMMELEKQRM EFTKDLEVQR MNMFMETQLQ IERSKCAAKH PPSAGENFRY LLHLFAFFLA SEK
101: NRLDYLIATN NVSASPCNRR PPASISLAVK EKISPDSNFG ALNYSGGSSR LNSSGSNDSS HDDLAFGSGE RKNKMEYVGL SEDTTAFKEL ARAILRFGEI
201: YERIESSKQQ QMMELEKQRM EFTKDLEVQR MNMFMETQLQ IERSKCAAKH PPSAGENFRY LLHLFAFFLA SEK
001: METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKKNSH
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKKNSH
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:F4K0Q7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.