Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36316 | Canola | nucleus | 81.53 | 80.56 |
| Bra034866.1-P | Field mustard | nucleus | 80.32 | 76.63 |
| CDY00995 | Canola | nucleus | 78.71 | 76.56 |
| AT5G05550.2 | Thale cress | nucleus | 73.9 | 73.9 |
| Bra034165.1-P | Field mustard | nucleus | 79.92 | 72.1 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 52.61 | 51.57 |
| Solyc06g051120.2.1 | Tomato | nucleus | 49.8 | 48.44 |
| PGSC0003DMT400077199 | Potato | cytosol | 49.0 | 44.69 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 44.98 | 42.11 |
| AT3G58630.1 | Thale cress | nucleus | 39.76 | 30.84 |
| AT1G54060.1 | Thale cress | nucleus | 38.15 | 24.8 |
| AT3G14180.1 | Thale cress | nucleus | 40.56 | 22.8 |
| AT3G24490.1 | Thale cress | nucleus | 26.51 | 19.82 |
Protein Annotations
| MapMan:15.5.20 | EntrezGene:820281 | ProteinID:AEE75002.1 | ArrayExpress:AT3G11100 | EnsemblPlantsGene:AT3G11100 | RefSeq:AT3G11100 |
| TAIR:AT3G11100 | RefSeq:AT3G11100-TAIR-G | EnsemblPlants:AT3G11100.1 | TAIR:AT3G11100.1 | EMBL:AY064137 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009873 | GO:GO:0009987 |
| GO:GO:0010468 | GO:GO:0042393 | InterPro:IPR006578 | InterPro:MADF-dom | RefSeq:NP_566386.1 | PFAM:PF13837 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF35 |
| UniProt:Q8VZI9 | SMART:SM00595 | UniParc:UPI000009D870 | SEG:seg | : | : |
Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
Coordinates
chr3:-:3476187..3477900
Molecular Weight (calculated)
28387.3 Da
IEP (calculated)
5.173
GRAVY (calculated)
-0.988
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.