Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11100.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g051120.2.1 | Tomato | nucleus | 55.91 | 55.47 |
| CDY00995 | Canola | nucleus | 53.94 | 53.52 |
| AT5G05550.2 | Thale cress | nucleus | 51.57 | 52.61 |
| AT3G11100.1 | Thale cress | nucleus | 51.57 | 52.61 |
| Bra034866.1-P | Field mustard | nucleus | 53.94 | 52.49 |
| CDY36316 | Canola | nucleus | 51.97 | 52.38 |
| PGSC0003DMT400077199 | Potato | cytosol | 55.51 | 51.65 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 50.79 | 48.5 |
| Bra034165.1-P | Field mustard | nucleus | 51.18 | 47.1 |
| CDX70144 | Canola | cytosol | 43.7 | 44.4 |
| Bra009119.1-P | Field mustard | nucleus | 43.7 | 44.22 |
| CDX98849 | Canola | cytosol | 46.06 | 38.11 |
| VIT_10s0003g01300.t01 | Wine grape | nucleus | 45.28 | 38.08 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 45.28 | 33.14 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 45.67 | 31.87 |
| VIT_11s0016g04130.t01 | Wine grape | nucleus | 31.89 | 22.13 |
| VIT_09s0002g04700.t01 | Wine grape | nucleus | 30.32 | 18.25 |
Protein Annotations
| ArrayExpress:VIT_08s0058g00200 | EMBL:FN594967 | EnsemblPlants:VIT_08s0058g00200.t01 | EnsemblPlantsGene:VIT_08s0058g00200 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF35 |
| PFAM:PF13837 | ProteinID:CCB44831 | ProteinID:CCB44831.1 | SEG:seg | UniParc:UPI000210A914 | UniProt:F6GXV1 |
| MapMan:15.5.20 | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:8891373..8895127
Molecular Weight (calculated)
28195.4 Da
IEP (calculated)
9.326
GRAVY (calculated)
-0.886
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNQAAHPNP RSHHHPFGGG GGGGGGGGGR EDCWSEGATE TLVEAWGDRY LELNRGNLRQ KDWKEVADAV NSRQNGVKPR KTYIQCKNRI DTLKKKYKLE
101: KSKPAPSSWP FYSRLDYLIG AAAAAAPGGK KFAAAAQRKL QSAGSTESSR GGGLDDGDDE DVVFDGRVRK HRMDSMDLSD GAACRELARA ILKFGEIYER
201: IECAKQQQMM DLEKQKMEFT KDLEVQRMHM FMDAQLELEK MKHPKFASGS GKKL
101: KSKPAPSSWP FYSRLDYLIG AAAAAAPGGK KFAAAAQRKL QSAGSTESSR GGGLDDGDDE DVVFDGRVRK HRMDSMDLSD GAACRELARA ILKFGEIYER
201: IECAKQQQMM DLEKQKMEFT KDLEVQRMHM FMDAQLELEK MKHPKFASGS GKKL
001: METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKQL
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKQL
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:F4K0Q7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.