Factsheet for VIT_11s0016g04130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04700.t01	Wine grape	nucleus	64.21	55.69
KRH48419	Soybean	nucleus	53.55	54.44
KRH39263	Soybean	nucleus	52.73	48.61
Solyc05g018350.2.1	Tomato	nucleus	46.17	47.88
PGSC0003DMT400070593	Potato	nucleus	45.9	47.73
CDX93016	Canola	nucleus	25.41	46.97
CDX94808	Canola	nucleus	40.16	45.79
AT3G24490.1	Thale cress	nucleus	41.53	45.65
Bra001951.1-P	Field mustard	nucleus	40.71	43.95
GSMUA_Achr8P26150_001	Banana	nucleus	38.8	40.57
GSMUA_Achr8P04010_001	Banana	nucleus	37.16	38.97
Os01t0718900-01	Rice	nucleus	29.78	33.85
VIT_08s0058g00200.t01	Wine grape	nucleus	22.13	31.89
TraesCS3B01G274700.1	Wheat	nucleus, plastid	27.05	31.73
TraesCS3A01G245400.1	Wheat	nucleus, plastid	27.05	31.53
TraesCS3D01G246100.1	Wheat	nucleus, plastid	26.5	30.7
OQU87430	Sorghum	nucleus, plastid	28.42	29.63
VIT_10s0003g01300.t01	Wine grape	nucleus	24.04	29.14
Zm00001d011730_P001	Maize	nucleus, plastid	26.5	27.71
VIT_09s0002g00720.t01	Wine grape	nucleus	24.86	25.0
VIT_12s0028g02150.t01	Wine grape	cytosol	23.22	24.5

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100245606	wikigene:100245606	MapMan:15.5.20	UniProt:A5CA72	EMBL:AM487802
ProteinID:CAN71046	ProteinID:CAN71046.1	ProteinID:CCB51528	ProteinID:CCB51528.1	ncoils:Coil	EMBL:FN595756
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0043565	InterPro:IPR017877
EntrezGene:LOC100245606	wikigene:LOC100245606	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR31307
PANTHER:PTHR31307:SF6	InterPro:SANT/Myb	TIGR:TC62677	UniParc:UPI0001522615	ArrayExpress:VIT_11s0016g04130	EnsemblPlantsGene:VIT_11s0016g04130
EnsemblPlants:VIT_11s0016g04130.t01	unigene:Vvi.12765	RefSeq:XP_002281208	RefSeq:XP_002281208.1	RefSeq:XP_003633126	RefSeq:XP_003633126.1
RefSeq:XP_003633127	RefSeq:XP_003633127.1	RefSeq:XP_003633128	RefSeq:XP_003633128.1	RefSeq:XP_010656339.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:3376824..3378266

Molecular Weight (calculated)

41986.0 Da

IEP (calculated)

4.287

GRAVY (calculated)

-1.196

Length

366 amino acids

Sequence
(BLAST)

001: MDDTEDDAGY PPKRYSVNHH SSFNTAPSSN RQKLPVRNAS YALQVPPQYD VVDEEEDDED NAQEEDELDE DDDEEDDDED DDVIEPAGDS GLNPKKRKLR
101: DLVNNYEFAP RVVPPPTSRL PFGGRNSSAE WTEHETFLLL EAWGERFVQL GRKSLRSDDW ADVAEKVSEG SKIERTDMQC RNRLDTLKKK YKKERAKVEE
201: MGGGNSKWVF YKKMDALMGL SPTPSRQQYG LACGVDSGEY VFMNPRVYLN RSNGLDEMRD SPGNSEYGDD DSEGLPLKRT NPGGDDEEGS SIRLLADSIE
301: KFGEIYEKIE KTKRQQMMEL EKMRMDFHRE LELRRKEMLE RTQAEIAKIR QGDDEDTDAS DENYSG

Best Arabidopsis Sequence Match ( AT3G24490.1 )
(BLAST)

001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.