CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39263	Soybean	nucleus	91.11	82.62
CDX93016	Canola	nucleus	30.28	55.05
VIT_11s0016g04130.t01	Wine grape	nucleus	54.44	53.55
CDX94808	Canola	nucleus	46.67	52.34
Bra001951.1-P	Field mustard	nucleus	47.5	50.44
PGSC0003DMT400070593	Potato	nucleus	49.17	50.28
AT3G24490.1	Thale cress	nucleus	46.11	49.85
Solyc05g018350.2.1	Tomato	nucleus	48.61	49.58
KRH23479	Soybean	nucleus	46.39	43.49
KRH09846	Soybean	nucleus	45.83	41.56
GSMUA_Achr8P26150_001	Banana	nucleus	36.67	37.71
GSMUA_Achr8P04010_001	Banana	nucleus	35.56	36.68
Os01t0718900-01	Rice	nucleus	27.5	30.75
TraesCS3B01G274700.1	Wheat	nucleus, plastid	25.0	28.85
TraesCS3A01G245400.1	Wheat	nucleus, plastid	24.72	28.34
TraesCS3D01G246100.1	Wheat	nucleus, plastid	24.72	28.16
OQU87430	Sorghum	nucleus, plastid	25.0	25.64
Zm00001d011730_P001	Maize	nucleus, plastid	23.06	23.71
KRH21272	Soybean	nucleus	20.28	23.4
KRH27047	Soybean	nucleus	19.72	23.13
KRH22283	Soybean	nucleus	19.44	22.88
KRH06239	Soybean	nucleus	21.39	20.81
KRH47662	Soybean	nucleus, plastid	21.11	20.65
KRH11016	Soybean	nucleus	13.06	18.8

Protein Annotations

EMBL:ACUP02004229	EnsemblPlants:KRH48419	EnsemblPlantsGene:GLYMA_07G087900	EntrezGene:100778031	ncoils:Coil	PANTHER:PTHR31307
PANTHER:PTHR31307:SF8	PFAM:PF13837	ProteinID:KRH48418.1	ProteinID:KRH48419	ProteinID:KRH48419.1	SEG:seg
UniParc:UPI0002338F20	UniProt:I1KIS6	MapMan:15.5.20	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:8139156..8142798

Molecular Weight (calculated)

40988.7 Da

IEP (calculated)

4.258

GRAVY (calculated)

-1.138

Length

360 amino acids

Sequence
(BLAST)

001: MDDMEDDARY PPKSFSLNRQ NPSHRHKHPI RAAPYHRPMP TRYQEPDDDD DDDNEPDDFD DGEAENGYDD DNNVAYPRIP KKRKVVAAAA AAAAGGSYEF
101: APRVKFSYGS RGSGSGSGSG SGEEWNESET FVLLEVWGDK FLQLGRNSLR SEEWHEVAEK VSEELKTERT VTQCRSVFDK LKRRYKKEKA RMDEMGLGSC
201: KWTFFKKMDM LMASSARQEY GLACGVDSGE YVFMNTRVYL NSSNGFDEMR DSPGESESDD DDDEEEDVGG GGGDEDEDED DEMSCRVLAD SIQKFGKIYE
301: KIENSKRQQM MELEKMRLDF NRELELQKKQ ILERAQAEIA KIQDVDEEDT DTSGGENLSE

Best Arabidopsis Sequence Match ( AT3G24490.1 )
(BLAST)

001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.