Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g018350.2.1 | Tomato | nucleus | 94.89 | 94.62 |
| CDX93016 | Canola | nucleus | 30.11 | 53.54 |
| KRH48419 | Soybean | nucleus | 50.28 | 49.17 |
| AT3G24490.1 | Thale cress | nucleus | 44.32 | 46.85 |
| CDX94808 | Canola | nucleus | 42.61 | 46.73 |
| Bra001951.1-P | Field mustard | nucleus | 44.6 | 46.31 |
| VIT_11s0016g04130.t01 | Wine grape | nucleus | 47.73 | 45.9 |
| KRH39263 | Soybean | nucleus | 48.86 | 43.32 |
| PGSC0003DMT400080593 | Potato | nucleus | 44.89 | 42.25 |
| GSMUA_Achr8P04010_001 | Banana | nucleus | 32.1 | 32.38 |
| GSMUA_Achr8P26150_001 | Banana | nucleus | 30.97 | 31.14 |
| Os01t0718900-01 | Rice | nucleus | 27.84 | 30.43 |
| TraesCS3A01G245400.1 | Wheat | nucleus, plastid | 24.72 | 27.71 |
| TraesCS3B01G274700.1 | Wheat | nucleus, plastid | 24.43 | 27.56 |
| PGSC0003DMT400026432 | Potato | cytosol | 22.44 | 27.34 |
| PGSC0003DMT400077199 | Potato | cytosol | 21.02 | 27.11 |
| TraesCS3D01G246100.1 | Wheat | nucleus, plastid | 23.86 | 26.58 |
| OQU87430 | Sorghum | nucleus, plastid | 23.86 | 23.93 |
| Zm00001d011730_P001 | Maize | nucleus, plastid | 23.58 | 23.71 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 23.01 | 21.72 |
| PGSC0003DMT400020194 | Potato | plastid | 20.17 | 18.54 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 20.74 | 18.39 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400070593 | EnsemblPlantsGene:PGSC0003DMG400027438 | EntrezGene:102592836 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0043565 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF8 | PFAM:PF13837 |
| PGSC:PGSC0003DMG400027438 | RefSeq:XP_006338157.1 | SEG:seg | UniParc:UPI000296352C | UniProt:M1CME4 | MapMan:15.5.20 |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027438]
Coordinates
chr5:-:18966333..18967540
Molecular Weight (calculated)
40570.5 Da
IEP (calculated)
4.416
GRAVY (calculated)
-1.189
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDSDDETPY PSRPNAAIYT SSLRSRRSIR NPTSYPRNTH YGYNNNEFQY NHHGAAGAAA ADESDDEEEN QEFSSGENDV DNFQGKRKRK LETLVSNYNF
101: APRPGSKEIW SEEESFVLLE VWGERYLELG RRSLRAEDWG EVAEKVTEMI GVDKTEAECR NQLDVLKKKY KKEITKMEKT GGGFHSKWTF FKKMDMLMNL
201: RMKGHCGLGC GLDSGEYVFM DPRMYLDRSN VLDEMRDSPA GSDADNDEEE EEQGSGGWEG DDASAKLLAD SIQRFGQIYE KIENSKRKQM MELEKMRRDF
301: QRELELQKKQ IVERAQLEIA KIRDDGENDD DEDNEDEDGE DTDNISGEKL RG
101: APRPGSKEIW SEEESFVLLE VWGERYLELG RRSLRAEDWG EVAEKVTEMI GVDKTEAECR NQLDVLKKKY KKEITKMEKT GGGFHSKWTF FKKMDMLMNL
201: RMKGHCGLGC GLDSGEYVFM DPRMYLDRSN VLDEMRDSPA GSDADNDEEE EEQGSGGWEG DDASAKLLAD SIQRFGQIYE KIENSKRKQM MELEKMRRDF
301: QRELELQKKQ IVERAQLEIA KIRDDGENDD DEDNEDEDGE DTDNISGEKL RG
001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.