CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09846	Soybean	nucleus	90.36	87.41
Solyc12g043090.1.1	Tomato	nucleus	54.95	56.27
PGSC0003DMT400080593	Potato	nucleus	54.43	55.88
VIT_09s0002g04700.t01	Wine grape	nucleus	60.68	55.21
KRH48419	Soybean	nucleus	43.49	46.39
KRH39263	Soybean	nucleus	43.23	41.81
GSMUA_Achr8P04010_001	Banana	nucleus	35.16	38.68
GSMUA_Achr8P26150_001	Banana	nucleus	34.11	37.43
Os01t0718900-01	Rice	nucleus	27.08	32.3
TraesCS3B01G274700.1	Wheat	nucleus, plastid	24.22	29.81
TraesCS3A01G245400.1	Wheat	nucleus, plastid	24.22	29.62
TraesCS3D01G246100.1	Wheat	nucleus, plastid	23.96	29.11
OQU87430	Sorghum	nucleus, plastid	25.0	27.35
KRH22283	Soybean	nucleus	21.35	26.8
KRH27047	Soybean	nucleus	21.35	26.71
Zm00001d011730_P001	Maize	nucleus, plastid	22.92	25.14
KRH06239	Soybean	nucleus	22.4	23.24
KRH47662	Soybean	nucleus, plastid	22.14	23.1
KRH21272	Soybean	nucleus	18.23	22.44
KRH11016	Soybean	nucleus	12.5	19.2

Protein Annotations

EMBL:ACUP02008468	EnsemblPlants:KRH23479	EnsemblPlantsGene:GLYMA_13G359800	EntrezGene:100814194	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF6	PFAM:PF13837
PFscan:PS50090	ProteinID:KRH23479	ProteinID:KRH23479.1	SEG:seg	UniParc:UPI000233B534	UniProt:K7M3V1
MapMan:15.5.20	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:44685993..44687848

Molecular Weight (calculated)

43890.2 Da

IEP (calculated)

4.366

GRAVY (calculated)

-1.234

Length

384 amino acids

Sequence
(BLAST)

001: MDGIEDDARY PPNPYGYGYQ NSLYSPPVDT EYALDDNDEN EEHVQLEGED EVDVDQSNNL QLPQKDDDEE DGMDGGGDEN DDDEEEEAEE NKQIDYYPTK
101: SDEDEVEWHP KKQKLKSLIS TYELAPRVPA PSVAATAPSV PKPSSGGRNS LTDWTERETF VLLDAWGDRF LQHGRKSLRC EEWQQIAKMV SQVSKIERTD
201: TQCRNRLDTL KKKYKKEKAK FPDSDGGACK WVYFKSMDEL MASPPQQAGL SCGVDSGEYV FMNPRVHLNH ANGLDEMRDS PDNTESTGEE GSDGPQAKKR
301: KKRRGSGEAS SFRLLADSIQ KFSKIYEKIE NSKRQQMVEL EKMRMDFHKE LETQKRQILE NLRCEISKLE QRNDDNDDSA ENGT

Best Arabidopsis Sequence Match ( AT3G24490.1 )
(BLAST)

001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.