CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27047	Soybean	nucleus	94.44	94.14
GSMUA_Achr6P26840_001	Banana	cytosol, mitochondrion, nucleus	46.08	54.23
GSMUA_Achr9P06410_001	Banana	nucleus	45.75	51.85
GSMUA_Achr1P11500_001	Banana	nucleus	41.5	51.42
KRH21272	Soybean	nucleus	50.65	49.68
GSMUA_Achr5P09160_001	Banana	nucleus	40.85	49.6
Solyc12g010890.1.1	Tomato	nucleus	51.96	49.23
Bra007407.1-P	Field mustard	nucleus, plastid	47.06	49.15
GSMUA_Achr1P27460_001	Banana	nucleus	39.54	47.45
VIT_12s0028g02150.t01	Wine grape	cytosol	53.59	47.26
Bra003346.1-P	Field mustard	nucleus	47.06	47.06
CDX71939	Canola	nucleus, plastid	46.08	46.84
CDX98311	Canola	nucleus	46.73	45.83
CDX67755	Canola	nucleus	47.06	45.57
AT3G58630.1	Thale cress	nucleus	47.71	45.48
KRH11016	Soybean	nucleus	35.95	44.0
PGSC0003DMT400020194	Potato	plastid	52.94	42.3
PGSC0003DMT400052607	Potato	nucleus, plastid	50.98	39.29
HORVU3Hr1G061870.1	Barley	nucleus	40.2	38.92
TraesCS3B01G305100.1	Wheat	nucleus	40.2	38.56
TraesCS3D01G271000.1	Wheat	nucleus	39.87	38.36
TraesCS3A01G271400.1	Wheat	nucleus	39.87	38.36
Zm00001d011571_P001	Maize	cytosol	38.89	37.78
Os05t0560600-01	Rice	nucleus	41.83	36.99
EES18672	Sorghum	nucleus	41.83	36.89
Zm00001d038994_P001	Maize	cytosol	41.18	36.73
EES03423	Sorghum	cytosol	37.91	36.59
Zm00001d043902_P001	Maize	nucleus	37.91	36.48
Solyc07g055100.2.1	Tomato	nucleus, plastid	50.98	36.36
Os01t0674000-01	Rice	nucleus	38.89	35.84
TraesCS1A01G392300.1	Wheat	nucleus	39.54	34.28
TraesCS1D01G400500.1	Wheat	nucleus	39.22	33.99
TraesCS1B01G420500.1	Wheat	nucleus	39.22	33.71
Zm00001d030350_P001	Maize	nucleus	20.91	30.48
KRH47662	Soybean	nucleus, plastid	35.95	29.89
KRH06239	Soybean	nucleus	35.29	29.19
KRH23479	Soybean	nucleus	26.8	21.35
KRH09846	Soybean	nucleus	26.47	20.4
KRH48419	Soybean	nucleus	22.88	19.44
KRH39263	Soybean	nucleus	22.88	17.63

Protein Annotations

EMBL:ACUP02008402	EnsemblPlants:KRH22283	EnsemblPlantsGene:GLYMA_13G290500	EntrezGene:100811154	InterPro:IPR006578	InterPro:MADF-dom
PANTHER:PTHR31307	PANTHER:PTHR31307:SF2	PFAM:PF13837	ProteinID:KRH22283	ProteinID:KRH22283.1	SEG:seg
SMART:SM00595	UniParc:UPI000233BAE2	UniProt:I1M3L6	MapMan:15.5.20	:	:

Description

hypothetical protein

Coordinates

chr13:+:39067810..39072587

Molecular Weight (calculated)

34100.1 Da

IEP (calculated)

10.719

GRAVY (calculated)

-0.848

Length

306 amino acids

Sequence
(BLAST)

001: MDSIAGAPPH ADVTPPPPRQ SPFPGREDCW SEEATFTLIE AWGQRHLELN RGNLRQRHWQ EVADAVNARH GHVSTKARRT DVQCKNRIDT LKKKYKIEKA
101: RVSDSGDSAT TWPFFRRLDF LIGDNFPAKK PSPPATAGIT RRSTPPAKSP PWAVIPVGPR SGTKKRPAAA KPASASPDSV ANSYFRRNFS VFAAAAAAAA
201: AAAADSENSN GSKWSSGSEK GTMKKKRTRG DWEFGYREMA EALEKFGEIY ERVEGAKQRQ MVELEKQRMQ FAKDLETQRM KLFMETQVHL QKINRSKRSS
301: ASDSVS

Best Arabidopsis Sequence Match ( AT3G58630.2 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.