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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G285900.2 Wheat nucleus 63.67 72.0
TraesCS5D01G294200.2 Wheat nucleus 66.88 49.17
TraesCS5A01G286600.1 Wheat nucleus 66.56 48.71
HORVU5Hr1G076330.27 Barley extracellular, nucleus 67.52 48.17
GSMUA_Achr8P17850_001 Banana nucleus 35.05 42.08
Zm00001d006090_P002 Maize nucleus 55.95 39.91
OQU89749 Sorghum nucleus 38.91 37.93
Zm00001d021054_P002 Maize mitochondrion, nucleus 27.65 29.35
VIT_17s0000g01350.t01 Wine grape nucleus 36.33 27.03
AT4G24900.1 Thale cress nucleus 31.19 23.04
PGSC0003DMT400065842 Potato nucleus 29.9 22.46
Solyc03g098330.2.1 Tomato nucleus 29.9 22.3
CDY03408 Canola nucleus 27.65 22.28
CDY34322 Canola nucleus 26.37 21.19
KRH54182 Soybean cytosol 27.01 21.16
Bra013844.1-P Field mustard nucleus 26.69 20.65
Protein Annotations
EMBL:AK066669EnsemblPlants:Os09t0506900-01EnsemblPlantsGene:Os09g0506900InterPro:CCDC84PANTHER:PTHR31198PFAM:PF14968
ProteinID:BAT08869.1SEG:segUniParc:UPI000188AD3DUniProt:B7ECI1MapMan:35.1:
Description
Conserved hypothetical protein. (Os09t0506900-01);Similar to cDNA clone:J013073G03, full insert sequence. (Os09t0506900-02)
Coordinates
chr9:+:19630562..19634603
Molecular Weight (calculated)
33855.7 Da
IEP (calculated)
8.218
GRAVY (calculated)
-0.349
Length
311 amino acids
Sequence
(BLAST)
001: MPPKRGAAPA AAFEYCELCR RNHDQGRRHR YFPAHRAALA AALSRFRSKL LDLRRALRHP SSAARSRLWC PFCSADLVDL DSRFACSNAI YHLASQDHLN
101: GVKAFLQKHG GGMDQVDSFR ISEDELAKWE KCCESSSTEQ ETSTEGLIGP SLGPLKDIRN KSTSKHLDNF AETYIPSSSN TASNVVMPLQ SPTNGAYYPN
201: STACQGSSSF GSIPYSAPFE TFGVPIIPCG SVALHEQQVM LGTDLFQSAG TKMKGGQLTI LGNGPNSSVS CSVHVQQRNS GGNSSQGTTH FYSFSNIYIY
301: IFVTISVEAC H
Best Arabidopsis Sequence Match ( AT4G24900.1 )
(BLAST)
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQENYQVSQD KKQIDGSYNP PGVVGMTSIS SSHSTDAGGN VHSGAPPPWL
301: DANDGDFSSV QLNQSDVARF QAKVPGKNRK LNPNRVGAAW AERRKIEIEM EKSGHVTKSN IDPDWLPNFG RVWQSGTRKE SRKEFEKEKR KLVKTESIST
401: ESEPVKIQPY ISKRARRESG E
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.