Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0506900-01 | Rice | nucleus | 72.0 | 63.67 |
| TraesCS5A01G286600.1 | Wheat | nucleus | 93.82 | 60.71 |
| TraesCS5D01G294200.2 | Wheat | nucleus | 93.09 | 60.52 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 88.0 | 55.5 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 39.64 | 42.08 |
| Zm00001d006090_P002 | Maize | nucleus | 60.36 | 38.07 |
| OQU89749 | Sorghum | nucleus | 42.18 | 36.36 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 32.36 | 30.38 |
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 38.55 | 25.36 |
| AT4G24900.1 | Thale cress | nucleus | 35.27 | 23.04 |
| CDY03408 | Canola | nucleus | 30.18 | 21.5 |
| PGSC0003DMT400065842 | Potato | nucleus | 32.0 | 21.26 |
| Solyc03g098330.2.1 | Tomato | nucleus | 32.0 | 21.1 |
| CDY34322 | Canola | nucleus | 29.45 | 20.93 |
| KRH54182 | Soybean | cytosol | 29.45 | 20.4 |
| Bra013844.1-P | Field mustard | nucleus | 29.09 | 19.9 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G285900.2 | EnsemblPlantsGene:TraesCS5B01G285900 | InterPro:CCDC84 | PANTHER:PTHR31198 | PFAM:PF14968 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:471306622..471308006
Molecular Weight (calculated)
29419.6 Da
IEP (calculated)
8.167
GRAVY (calculated)
-0.380
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKPHAAGG SFEYCELCRR NHDQGRRHRY FPAHRAALAA ALSGFRAKLA DLRRALLRPS APAPRSRLWC PFCSADLVDL DSRFACSNAI YHLASEEHLK
101: GVKDFLRKHG GGMDQVDSFR ISEDELAKWE KGCESSGTEA QALANGMIGP SLGPLKDIQN ESTSKILDSF AETDIPSFRN TASCVVMPLQ SPTNGAYYPT
201: STACHGSSTS GSVAYSAPFG TSGLPVKPCV TTHGHQGMPS TNVFHSADAQ MKGAQSTSLG NGPNPPSSSF VYVSI
101: GVKDFLRKHG GGMDQVDSFR ISEDELAKWE KGCESSGTEA QALANGMIGP SLGPLKDIQN ESTSKILDSF AETDIPSFRN TASCVVMPLQ SPTNGAYYPT
201: STACHGSSTS GSVAYSAPFG TSGLPVKPCV TTHGHQGMPS TNVFHSADAQ MKGAQSTSLG NGPNPPSSSF VYVSI
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.