Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013844.1-P | Field mustard | nucleus | 95.09 | 91.54 |
| CDY03408 | Canola | nucleus | 88.63 | 88.86 |
| AT4G24900.1 | Thale cress | nucleus | 66.15 | 60.81 |
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 49.1 | 45.45 |
| KRH54182 | Soybean | cytosol | 42.64 | 41.56 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 26.1 | 39.0 |
| Solyc03g098330.2.1 | Tomato | nucleus | 40.05 | 37.17 |
| PGSC0003DMT400065842 | Potato | nucleus | 39.28 | 36.72 |
| TraesCS5A01G286600.1 | Wheat | nucleus | 38.5 | 35.06 |
| TraesCS5D01G294200.2 | Wheat | nucleus | 38.24 | 34.99 |
| OQU89749 | Sorghum | nucleus | 27.91 | 33.86 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 37.73 | 33.49 |
| Zm00001d006090_P002 | Maize | nucleus | 37.47 | 33.26 |
| TraesCS5B01G285900.2 | Wheat | nucleus | 20.93 | 29.45 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 21.96 | 29.01 |
| Os09t0506900-01 | Rice | nucleus | 21.19 | 26.37 |
Protein Annotations
| EnsemblPlants:CDY34322 | EnsemblPlantsGene:GSBRNA2T00056361001 | InterPro:CCDC84 | PANTHER:PTHR31198 | PFAM:PF14968 | ProteinID:CDY34322 |
| ProteinID:CDY34322.1 | SEG:seg | UniParc:UPI0004EDF485 | UniProt:A0A078H9J2 | MapMan:35.1 | : |
Description
BnaA01g14250DBnaA01g14250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9J2]
Coordinates
chrLK032332:+:299798..301803
Molecular Weight (calculated)
44217.8 Da
IEP (calculated)
8.887
GRAVY (calculated)
-0.869
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKNTKAKK KPSKKNEFDF CKVCRFHHDH GPRHKYFPRH KELLSAFLNR FRSKIADVRF FLKNPSFLRP QEESQNRVWC VFCDEDIVDL GSSFACSKAI
101: NHFASSEHHK NIKQFLWKHG PSMDCVDDFK ISDADVAKWV RKCTALGNKD ASSCTGQLSR TSSDIHNKFE FERTEKETHF FNPNNLNDVK PLLYNTNEYQ
201: ISHSGVTHYG SHLNVDATQL PPGVIGMTSN SSSHSGDSSG NVHSGAPPPW LTPNDGNIFN QSEITRVQEK IPVKTTSKLN PHRVGAAWAE RRKIEMEMEK
301: RGEAVNSNTD ADWLPNFGRV WQSGTRKDSR KEFEKEKRKL VVTAESISME SEEQKLVKTE SISVESEEPV QIQPYVSKRA RAMKSGE
101: NHFASSEHHK NIKQFLWKHG PSMDCVDDFK ISDADVAKWV RKCTALGNKD ASSCTGQLSR TSSDIHNKFE FERTEKETHF FNPNNLNDVK PLLYNTNEYQ
201: ISHSGVTHYG SHLNVDATQL PPGVIGMTSN SSSHSGDSSG NVHSGAPPPW LTPNDGNIFN QSEITRVQEK IPVKTTSKLN PHRVGAAWAE RRKIEMEMEK
301: RGEAVNSNTD ADWLPNFGRV WQSGTRKDSR KEFEKEKRKL VVTAESISME SEEQKLVKTE SISVESEEPV QIQPYVSKRA RAMKSGE
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.