Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G294200.2 | Wheat | nucleus | 94.35 | 94.8 |
| TraesCS5B01G285900.2 | Wheat | nucleus | 60.71 | 93.82 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 88.47 | 86.24 |
| Os09t0506900-01 | Rice | nucleus | 48.71 | 66.56 |
| Zm00001d006090_P002 | Maize | nucleus | 61.88 | 60.32 |
| OQU89749 | Sorghum | nucleus | 45.18 | 60.19 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 38.59 | 55.97 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 28.0 | 45.95 |
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 42.35 | 43.06 |
| AT4G24900.1 | Thale cress | nucleus | 39.29 | 39.67 |
| CDY03408 | Canola | nucleus | 35.29 | 38.86 |
| CDY34322 | Canola | nucleus | 35.06 | 38.5 |
| Bra013844.1-P | Field mustard | nucleus | 34.59 | 36.57 |
| Solyc03g098330.2.1 | Tomato | nucleus | 35.29 | 35.97 |
| PGSC0003DMT400065842 | Potato | nucleus | 34.82 | 35.75 |
| KRH54182 | Soybean | cytosol | 33.18 | 35.52 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G286600.1 | EnsemblPlantsGene:TraesCS5A01G286600 | InterPro:CCDC84 | PANTHER:PTHR31198 | PFAM:PF14968 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:494388234..494391614
Molecular Weight (calculated)
46092.2 Da
IEP (calculated)
9.570
GRAVY (calculated)
-0.645
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKPHGGGA GSGAFEYCEL CRRNHDQGRR HRYFPAHRAA LAAALSGFRA KLADLRRALL RPSAPAPRSR LWCPFCSADL VDLDSRFACS NAIYHLASGE
101: HLKGVKDFLR KHGGGMDQVD SFRISEAELA KWEKGCESSS TEAQALANGM IGPSLRPLKD IQNESTSKIL DSFAETDIPS FRNTASCVVM PLQSPTNGAY
201: YPTSTACYGS STSGSVAYSA PFGTSGLPVK PCVTTHGHQG MPSTNVFHSA DARMKGAQST SLGNGPNPPA SSFVYVQQGH SGGKFNQGLK ANVHTGAPPP
301: WLEASEHDPK NVSLASYALP SSLKGKSRKL NPKRVGAAWA ERRRAEMEME KRGEVVPETP DASWLPNFGG VWQSGSRKES RKEFEKNHKL KEENNPELLP
401: EIKPYISKRM RVGSNKDGQP DSTVE
101: HLKGVKDFLR KHGGGMDQVD SFRISEAELA KWEKGCESSS TEAQALANGM IGPSLRPLKD IQNESTSKIL DSFAETDIPS FRNTASCVVM PLQSPTNGAY
201: YPTSTACYGS STSGSVAYSA PFGTSGLPVK PCVTTHGHQG MPSTNVFHSA DARMKGAQST SLGNGPNPPA SSFVYVQQGH SGGKFNQGLK ANVHTGAPPP
301: WLEASEHDPK NVSLASYALP SSLKGKSRKL NPKRVGAAWA ERRRAEMEME KRGEVVPETP DASWLPNFGG VWQSGSRKES RKEFEKNHKL KEENNPELLP
401: EIKPYISKRM RVGSNKDGQP DSTVE
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.