Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G24900.1 | Thale cress | nucleus | 50.72 | 50.36 |
| KRH54182 | Soybean | cytosol | 47.13 | 49.62 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 30.62 | 49.42 |
| CDY34322 | Canola | nucleus | 45.45 | 49.1 |
| CDY03408 | Canola | nucleus | 45.22 | 48.96 |
| Solyc03g098330.2.1 | Tomato | nucleus | 48.56 | 48.68 |
| Bra013844.1-P | Field mustard | nucleus | 45.93 | 47.76 |
| PGSC0003DMT400065842 | Potato | nucleus | 47.13 | 47.58 |
| TraesCS5A01G286600.1 | Wheat | nucleus | 43.06 | 42.35 |
| TraesCS5D01G294200.2 | Wheat | nucleus | 42.82 | 42.32 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 43.78 | 41.97 |
| TraesCS5B01G285900.2 | Wheat | nucleus | 25.36 | 38.55 |
| Zm00001d006090_P002 | Maize | nucleus | 40.19 | 38.53 |
| OQU89749 | Sorghum | nucleus | 27.99 | 36.68 |
| Os09t0506900-01 | Rice | nucleus | 27.03 | 36.33 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 22.25 | 31.74 |
Protein Annotations
| ArrayExpress:VIT_17s0000g01350 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g01350.t01 | EnsemblPlantsGene:VIT_17s0000g01350 | InterPro:CCDC84 | ncoils:Coil |
| PANTHER:PTHR31198 | PFAM:PF14968 | ProteinID:CCB43328 | ProteinID:CCB43328.1 | SEG:seg | UniParc:UPI00021099F6 |
| UniProt:F6GSV9 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr17:-:949989..955526
Molecular Weight (calculated)
47103.4 Da
IEP (calculated)
9.200
GRAVY (calculated)
-0.746
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIGNPKPN LNSDTAKKMA KKKKSNNGEF EFCKVCNLNH NQGRRHNYFP NHTKSLSSFL SRFLSKLSDV RFSLKDPSPL RPEHASRNRL WCIFCDADID
101: ELGSSFACNN AINHLASLDH LKNLKSFLWK HGGGMDRVDS FRVSEADLAK WEKKCKLLKS TDASSSEGSC RPLLGPSNDI HNELNYENIN NFDKNVVYSL
201: ESSLSNGVMP LQYHTNEIYQ VSHSEFFGVP KVGSLLHDVT SFWPAETHSS TDLWNLKDLT VANGGSSSQS LQYLTQICSK SPEEAEGNVH SGAPPPWFEA
301: TEGNKINVLQ KPGFGSLTSP INKSGKSHKL NPKRVGAAWA ERRKIELEME KRGEIVTSNC DVNWLPNFGR VWQSGSRKES RKEFETEKQK LPKVENQSDL
401: SIKIQPYISK RMRRDVND
101: ELGSSFACNN AINHLASLDH LKNLKSFLWK HGGGMDRVDS FRVSEADLAK WEKKCKLLKS TDASSSEGSC RPLLGPSNDI HNELNYENIN NFDKNVVYSL
201: ESSLSNGVMP LQYHTNEIYQ VSHSEFFGVP KVGSLLHDVT SFWPAETHSS TDLWNLKDLT VANGGSSSQS LQYLTQICSK SPEEAEGNVH SGAPPPWFEA
301: TEGNKINVLQ KPGFGSLTSP INKSGKSHKL NPKRVGAAWA ERRKIELEME KRGEIVTSNC DVNWLPNFGR VWQSGSRKES RKEFETEKQK LPKVENQSDL
401: SIKIQPYISK RMRRDVND
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.