Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g02240.t01 | |
| VIT_17s0000g07490.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61790.1 | VIT_17s0000g07490.t01 | AT1G19010.1 | 21798944 |
| AT3G61790.1 | VIT_01s0010g02240.t01 | AT3G26050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0726g00020.t01 | Wine grape | extracellular | 45.78 | 99.13 |
| VIT_00s0663g00030.t01 | Wine grape | cytosol, extracellular, nucleus | 40.96 | 96.23 |
| VIT_15s0046g00390.t01 | Wine grape | nucleus | 63.05 | 58.36 |
| VIT_15s0046g00400.t01 | Wine grape | cytosol | 59.44 | 54.81 |
| VIT_00s0426g00040.t01 | Wine grape | mitochondrion | 49.4 | 51.04 |
| VIT_15s0046g00410.t01 | Wine grape | cytosol | 34.14 | 46.96 |
| VIT_02s0025g01660.t01 | Wine grape | cytosol | 48.59 | 38.29 |
| KRG97189 | Soybean | nucleus | 47.79 | 37.9 |
| PGSC0003DMT400023575 | Potato | cytosol | 47.39 | 37.58 |
| Solyc03g083270.2.1 | Tomato | cytosol | 46.99 | 37.38 |
| PGSC0003DMT400048586 | Potato | mitochondrion | 47.39 | 36.76 |
| Solyc06g051980.2.1 | Tomato | cytosol | 46.18 | 36.51 |
| PGSC0003DMT400050427 | Potato | cytosol | 46.18 | 36.51 |
| KRH68916 | Soybean | nucleus | 47.79 | 36.28 |
| GSMUA_Achr6P22600_001 | Banana | cytosol | 45.38 | 36.1 |
| Solyc10g009420.2.1 | Tomato | nucleus | 45.78 | 36.08 |
| CDX92848 | Canola | nucleus | 43.78 | 35.74 |
| Solyc05g050580.2.1 | Tomato | nucleus | 47.39 | 35.65 |
| CDX97399 | Canola | nucleus | 45.78 | 35.51 |
| PGSC0003DMT400018049 | Potato | nucleus | 47.39 | 35.44 |
| CDY19018 | Canola | nucleus | 45.78 | 35.4 |
| CDY14268 | Canola | nucleus | 45.38 | 35.31 |
| Bra010392.1-P | Field mustard | nucleus | 45.38 | 35.31 |
| Bra003473.1-P | Field mustard | nucleus | 44.98 | 35.22 |
| VIT_16s0098g01850.t01 | Wine grape | cytosol | 46.18 | 35.17 |
| AT4G27880.1 | Thale cress | nucleus | 46.18 | 35.17 |
| Solyc01g096020.2.1 | Tomato | cytosol | 46.99 | 35.14 |
| CDX89221 | Canola | nucleus | 45.38 | 35.09 |
| Bra026301.1-P | Field mustard | nucleus | 45.38 | 35.09 |
| CDY25077 | Canola | nucleus | 45.38 | 34.98 |
| CDX67865 | Canola | nucleus | 45.38 | 34.98 |
| AT3G61790.1 | Thale cress | nucleus | 45.78 | 34.97 |
| PGSC0003DMT400000649 | Potato | cytosol | 46.99 | 34.82 |
| VIT_13s0139g00150.t01 | Wine grape | cytosol, nucleus, plastid | 42.57 | 34.75 |
| Bra014421.1-P | Field mustard | cytosol | 44.18 | 34.38 |
| CDY43950 | Canola | nucleus | 44.58 | 34.15 |
| VIT_06s0004g01130.t01 | Wine grape | cytosol | 42.17 | 34.09 |
| CDX89132 | Canola | cytosol | 44.58 | 34.05 |
| VIT_08s0007g06740.t01 | Wine grape | cytosol | 42.57 | 33.65 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 42.97 | 30.75 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.85 | 16.0 |
Protein Annotations
| Gene3D:2.60.210.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | ProteinID:CBI40557 | ProteinID:CBI40557.3 |
| UniProt:D7UCU2 | EMBL:FN596755 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR008974 |
| InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF34 | InterPro:SINA-like |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI0001BE522C | ArrayExpress:VIT_15s0046g00380 | EnsemblPlantsGene:VIT_15s0046g00380 |
| EnsemblPlants:VIT_15s0046g00380.t01 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:D7UCU2]
Coordinates
chr15:+:17375822..17379543
Molecular Weight (calculated)
27858.8 Da
IEP (calculated)
7.911
GRAVY (calculated)
-0.062
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MESGESSECV ASSGCHHHHR SSLRHHQNGV VSGVLRRSLT MVLELLKCSV CFDFMYSPIY HCHNGHTLCS SCKARVLNKC PSCRQQLGNI RCLALEKMAK
101: SLELHCYHAL WLQFKCRFLI ADVNEEETCT WMVKIINCYG KYFCVHAEAF FQASTPICVV FLSLTGNHAE ACNYSCSLEI GGNGRKLTFE GIPRSIRESE
201: RSLESADSLI VLGSMVHSLG GETREPKLEI TCRIRKSQIP MCACVDKTG
101: SLELHCYHAL WLQFKCRFLI ADVNEEETCT WMVKIINCYG KYFCVHAEAF FQASTPICVV FLSLTGNHAE ACNYSCSLEI GGNGRKLTFE GIPRSIRESE
201: RSLESADSLI VLGSMVHSLG GETREPKLEI TCRIRKSQIP MCACVDKTG
001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE
Arabidopsis Description
SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.