Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G014490.1 | Barley | plastid | 8.4 | 16.94 |
| VIT_01s0026g00960.t01 | Wine grape | nucleus | 19.78 | 14.23 |
| VIT_18s0001g05830.t01 | Wine grape | nucleus | 19.78 | 13.98 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 17.34 | 13.25 |
| TraesCS2D01G087000.1 | Wheat | nucleus | 17.07 | 13.04 |
| CDX99732 | Canola | nucleus | 17.62 | 12.17 |
| OQU79091 | Sorghum | nucleus | 13.55 | 12.11 |
| VIT_14s0219g00090.t01 | Wine grape | nucleus | 18.16 | 11.82 |
| AT3G26050.1 | Thale cress | nucleus | 16.8 | 11.63 |
| GSMUA_Achr6P03270_001 | Banana | nucleus | 12.74 | 11.33 |
| Zm00001d023630_P005 | Maize | nucleus | 13.82 | 10.94 |
| Bra036350.1-P | Field mustard | nucleus | 16.26 | 10.77 |
| Os12t0273700-01 | Rice | nucleus | 11.38 | 10.47 |
| CDY40987 | Canola | nucleus | 16.26 | 10.43 |
| VIT_01s0011g04850.t01 | Wine grape | nucleus | 15.72 | 9.78 |
| TraesCS2A01G089100.1 | Wheat | nucleus | 8.4 | 9.39 |
| VIT_07s0005g05560.t01 | Wine grape | mitochondrion, plastid | 1.9 | 8.24 |
| HORVU2Hr1G014550.1 | Barley | cytosol | 6.78 | 4.55 |
Protein Annotations
| ArrayExpress:VIT_01s0010g02240 | EMBL:FN595754 | EnsemblPlants:VIT_01s0010g02240.t01 | EnsemblPlantsGene:VIT_01s0010g02240 | EntrezGene:100251196 | EntrezGene:LOC100251196 |
| PANTHER:PTHR31358 | PANTHER:PTHR31358:SF12 | ProteinID:CCB51226 | ProteinID:CCB51226.1 | RefSeq:XP_002267575 | RefSeq:XP_002267575.2 |
| SEG:seg | unigene:Vvi.21605 | UniParc:UPI0002109B29 | UniProt:F6HG33 | wikigene:100251196 | wikigene:LOC100251196 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:19217168..19218992
Molecular Weight (calculated)
40853.3 Da
IEP (calculated)
4.897
GRAVY (calculated)
-0.826
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MSESLAWEKW SSFSQNRYLE EAEKFSKPGS VAQKKAYFEA HYKRIAAKKA AEAEAAANDF PEPEALDEIH NTSSDDLDTV KENSHMIIDE SEGQEALNTN
101: TVVDEIHNSS SDELDTLKEN SPMIIDEPEG QEEAPNTQLV VDCVEKIELE EVKVEEVEEA EPVTVQTVIE ESPRAQTEFS DQIENVEEER MPLKEVADEE
201: KNLALRSNKK LAKSSSKSST QGRASKLGAS PAKVTSLAHV RKENNASPST KKPAPDALNK KRFTPKSLHM SINFASLAGE TSKKASPVLQ KNRNSRINAI
301: AAKITEESST PRRTTIRASM SGISKHTSAT TPQSENRRTR TLLDQSVSGN RTAEGKWQSL LAELLVWET
101: TVVDEIHNSS SDELDTLKEN SPMIIDEPEG QEEAPNTQLV VDCVEKIELE EVKVEEVEEA EPVTVQTVIE ESPRAQTEFS DQIENVEEER MPLKEVADEE
201: KNLALRSNKK LAKSSSKSST QGRASKLGAS PAKVTSLAHV RKENNASPST KKPAPDALNK KRFTPKSLHM SINFASLAGE TSKKASPVLQ KNRNSRINAI
301: AAKITEESST PRRTTIRASM SGISKHTSAT TPQSENRRTR TLLDQSVSGN RTAEGKWQSL LAELLVWET
001: MTENLEWGKW SSFSHKKYVE EAEKYSRPGS VAQKKAFFEA HYKRIAEAKK AATEEQPSVT PAEVLLHTLE TQPPPPPPPL VLKYGEEGRE RNSFQIDDHD
101: VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS
201: NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIREWHRLCS IHTSLEKSPS AIGISFFCLV LFESLLSVLL CNERTTPVS
101: VTDELENVMF GGDYVKEEEE KKVEEELLKE DWSVGEKEKQ HRKSVTKNRP VFRLSLEKTI PPKSLDEISL TEKRSERPMT QVEEKPVHRQ RFGLLSCFIS
201: NAKTQDQNQS RNKRKTEKKK QFLCLCLKPK TIREWHRLCS IHTSLEKSPS AIGISFFCLV LFESLLSVLL CNERTTPVS
Arabidopsis Description
Transcriptional regulator ATRX-like protein [Source:UniProtKB/TrEMBL;Acc:F4IWH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.