Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40987 | Canola | nucleus | 74.91 | 69.57 |
| Bra036350.1-P | Field mustard | nucleus | 48.69 | 46.68 |
| AT3G26050.1 | Thale cress | nucleus | 29.03 | 29.08 |
| CDX99631 | Canola | cytosol | 6.74 | 24.83 |
| CDY46410 | Canola | cytosol | 6.18 | 20.25 |
| CDY48358 | Canola | nucleus | 10.11 | 19.35 |
| CDY34153 | Canola | nucleus | 10.11 | 19.35 |
| CDX83685 | Canola | nucleus | 8.99 | 19.28 |
| HORVU2Hr1G014490.1 | Barley | plastid | 6.37 | 18.58 |
| CDX74313 | Canola | nucleus | 13.67 | 18.25 |
| CDY13707 | Canola | nucleus | 8.61 | 18.11 |
| VIT_01s0010g02240.t01 | Wine grape | nucleus | 12.17 | 17.62 |
| CDX91933 | Canola | nucleus | 10.67 | 17.59 |
| CDY32377 | Canola | nucleus | 9.55 | 17.29 |
| CDX72762 | Canola | nucleus | 14.23 | 16.74 |
| CDY42558 | Canola | nucleus | 8.8 | 16.04 |
| CDY33408 | Canola | nucleus | 11.05 | 15.86 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 13.86 | 15.32 |
| CDY11620 | Canola | nucleus | 14.04 | 15.31 |
| CDX96289 | Canola | nucleus | 13.86 | 15.26 |
| CDY36374 | Canola | nucleus | 9.36 | 14.88 |
| CDY38789 | Canola | nucleus | 8.24 | 14.77 |
| CDY11706 | Canola | nucleus | 8.43 | 14.75 |
| CDX67471 | Canola | nucleus | 8.24 | 14.43 |
| Zm00001d023630_P005 | Maize | nucleus | 12.55 | 14.38 |
| OQU79091 | Sorghum | nucleus | 11.05 | 14.29 |
| TraesCS2D01G087000.1 | Wheat | nucleus | 12.92 | 14.29 |
| CDY25766 | Canola | nucleus | 9.55 | 13.75 |
| CDY38790 | Canola | nucleus | 3.56 | 13.67 |
| CDY16238 | Canola | nucleus | 12.92 | 13.64 |
| CDY12493 | Canola | nucleus | 7.68 | 13.1 |
| Os12t0273700-01 | Rice | nucleus | 8.99 | 11.97 |
| CDY14672 | Canola | nucleus | 10.86 | 11.69 |
| TraesCS2A01G089100.1 | Wheat | nucleus | 6.93 | 11.21 |
| CDY15926 | Canola | plastid | 4.68 | 10.08 |
| CDY46409 | Canola | nucleus | 4.49 | 9.13 |
| HORVU2Hr1G014550.1 | Barley | cytosol | 6.93 | 6.74 |
Protein Annotations
| EnsemblPlants:CDX99732 | EnsemblPlantsGene:GSBRNA2T00108357001 | InterPro:TPX2_C | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF17 | PFAM:PF06886 |
| ProteinID:CDX99732 | ProteinID:CDX99732.1 | SEG:seg | UniParc:UPI0004EE879D | MapMan:35.2 | : |
Description
BnaC02g35880D
Coordinates
chrLK031913:-:534346..536984
Molecular Weight (calculated)
58849.7 Da
IEP (calculated)
10.594
GRAVY (calculated)
-0.996
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSVCLARS FSQPADTSSH EVIPRGVLTE SVSFGRFASE TLQWAKWSAF TQNRYLEEVE RFTKPGSVAE KKAFFEAHFK NRASGNTTKT KKTQEVQKEN
101: LISHETVCEV PEENLVDSEV TCIEVSSAEM GSVAPSVSVT DAISEKFDSV VVPEDEDLDK ENSTSLSKER HPSSSSGSKT NSRSSIPESS FSVALDLPLK
201: KARKEPLSTR KRSTNVSRNQ SRSPPQPFHM SINCAPTDNS GKKMHQSGSR SSTKVKDALK ADKERSGPSS VHMPLNSATS TRQTTKTAPK RLARRSTTQE
301: TSSSNAGTSA KPKGNEPTVA SKGRKRPLSR GAKEDSDVPK CSTRASAFGL PKLPPPPPNS RPLDEKRKNI TVGSSVSSRI PNNVQRQPSA SCENLSTHSR
401: TRAKSFTVST PFNFRSDERA EKRKEFFKKV EEKKKKEDAV KEQSSCGFKE HQEFKNPQVG GFQAPMISLT SPSVRRNQTP GRENIQKSRE SPQKVASVKT
501: TNARNPTTEK YKRCKIHPSL TKKKTQEDSS PNVL
101: LISHETVCEV PEENLVDSEV TCIEVSSAEM GSVAPSVSVT DAISEKFDSV VVPEDEDLDK ENSTSLSKER HPSSSSGSKT NSRSSIPESS FSVALDLPLK
201: KARKEPLSTR KRSTNVSRNQ SRSPPQPFHM SINCAPTDNS GKKMHQSGSR SSTKVKDALK ADKERSGPSS VHMPLNSATS TRQTTKTAPK RLARRSTTQE
301: TSSSNAGTSA KPKGNEPTVA SKGRKRPLSR GAKEDSDVPK CSTRASAFGL PKLPPPPPNS RPLDEKRKNI TVGSSVSSRI PNNVQRQPSA SCENLSTHSR
401: TRAKSFTVST PFNFRSDERA EKRKEFFKKV EEKKKKEDAV KEQSSCGFKE HQEFKNPQVG GFQAPMISLT SPSVRRNQTP GRENIQKSRE SPQKVASVKT
501: TNARNPTTEK YKRCKIHPSL TKKKTQEDSS PNVL
001: MGESICLVRS FSQPSEFSSR EINEVVPNRV LTESVSFGRY ANETLAWARW SAFTQNRYLE EVERFTKPGS VAEKKAFFEA HFKNRASGKA ATQTKKIEQV
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN
101: KVKDSVEIVC DIPKDILVDS EVPLAVNREV SSNEVDSVVP SISVIDETGK VENLKSVVVP DEGNSTSLSK ERPPSSSGSK VSSSKLESSV VIELDHSLKN
201: TKKESSSSST RSLSASKNRS RSPPEPIHMS ISCVSSSNTE KTIVGRPQNG SRSAVKADKK KRSGPSSVHM SLNFASSTLR TTKEAPKTLA RNSTTQGTTS
301: TNARNKLFPK INEPTGALKS CKRPLSQTSK DGSTNASAVT LPRLPLLSNL LSENKRKNIS VRSSVSCRIS NNEQRKPSVG CENLSTHSRT KAKSLTVSSP
401: FVFRSDERAE KRKEFFKKVE EKNKKEKEDK FSCGFKANQN TNLASEEHKN PQVGGFQVTP MTLTSPRFRR NQTPGKENIK KPHQTPHKAS SMKIINTKKV
501: VMEKHKSSKI HPSSKQQTTK RTQENMSPNI LQN
Arabidopsis Description
TPX2 (Targeting protein for Xklp2) protein family [Source:UniProtKB/TrEMBL;Acc:Q84JG6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.