CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99631	Canola	cytosol	23.31	26.21
KRH33693	Soybean	nucleus	28.83	22.07
CDY38789	Canola	nucleus	38.04	20.81
CDX83685	Canola	nucleus	28.22	18.47
CDY13707	Canola	nucleus	27.61	17.72
KRG99370	Soybean	nucleus	25.77	17.36
CDY48358	Canola	nucleus	29.45	17.2
CDY34153	Canola	nucleus	29.45	17.2
CDY32377	Canola	nucleus	28.22	15.59
CDY42558	Canola	nucleus	26.99	15.02
CDX67471	Canola	nucleus	27.61	14.75
CDY11706	Canola	nucleus	27.61	14.75
KRH16191	Soybean	nucleus	33.13	14.59
Bra016318.1-P	Field mustard	nucleus	42.33	14.14
CDY14672	Canola	nucleus	41.72	13.71
CDY36374	Canola	nucleus	27.61	13.39
KRH69438	Soybean	nucleus	41.1	13.35
CDY16238	Canola	nucleus	38.65	12.45
KRH45764	Soybean	nucleus	36.81	12.45
KRG99221	Soybean	nucleus	36.2	12.37
CDX91933	Canola	nucleus	23.93	12.04
KRH74704	Soybean	nucleus	39.88	11.97
CDY11620	Canola	nucleus	35.58	11.84
VIT_01s0026g00960.t01	Wine grape	nucleus	36.81	11.7
AT1G24160.1	Thale cress	nucleus	38.65	11.67
CDY33408	Canola	nucleus	26.38	11.56
PGSC0003DMT400004849	Potato	nucleus	31.29	11.33
CDY25766	Canola	nucleus	25.77	11.32
CDX74313	Canola	nucleus	26.99	11.0
PGSC0003DMT400058225	Potato	nucleus	37.42	10.23
CDX72762	Canola	nucleus	27.61	9.91
Solyc05g006490.2.1	Tomato	nucleus	36.2	9.8
CDY15926	Canola	plastid	14.72	9.68
CDX96289	Canola	nucleus	27.61	9.28
CDY38790	Canola	nucleus	5.52	6.47
CDX99732	Canola	nucleus	20.25	6.18
CDY40987	Canola	nucleus	21.47	6.09
CDY46409	Canola	nucleus	9.2	5.7
Solyc04g005060.2.1	Tomato	nucleus	9.2	4.01
CDY12493	Canola	nucleus	6.75	3.51

Protein Annotations

EnsemblPlants:CDY46410	EnsemblPlantsGene:GSBRNA2T00083955001	PANTHER:PTHR31358	PANTHER:PTHR31358:SF17	ProteinID:CDY46410	ProteinID:CDY46410.1
UniParc:UPI0004EEE792	UniProt:A0A078I694	MapMan:35.2	:	:	:

Description

BnaA08g20200DBnaA08g20200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I694]

Coordinates

chrLK032666:-:1284..1875

Molecular Weight (calculated)

18293.5 Da

IEP (calculated)

4.818

GRAVY (calculated)

-0.644

Length

163 amino acids

Sequence
(BLAST)

001: MGEMQVGVAT IDDKGLYGLM EDKPVKAVAS SNPSLQVSVS FGRFENDILS WEKFSTFSPN KYLEEVGKFA TPGSVAQKKA YFEAHYKKIA ERKGEVMVHE
101: KQMDKNMSFR SVVTDQGSME GEIDEECNGQ FTCEEDKHVT DIASEVKEVN ERNYHCQGMS KLG

Best Arabidopsis Sequence Match ( AT1G24160.1 )
(BLAST)

001: MGDMQVGVAT IDDKGFYGLM EDTQVKAVAS SNPSLQVSVS FGRFENDSLS WEKFSAFSPN KYLEEVGKCA TPGSVAQKKA YFEAHYKKIA ERKAEIIDQE
101: KLMDENASFR SIVSDQESVE CENGGVVVES EVDNGCNGQL SCDEDKHVTD ITAKVNQVSI DESNEETIVV KECQSSVDTV KDEVKDSVDS PVLEKAEEIA
201: LEEEKIEMVV HVQERSEEVL QEDEKEETEV REEVRDDISL QNDTVDANET TKKVVKKEKK PNLIKKNDGN VRINPTRGSL KPNQVGGKPE TNKTVTSRKT
301: PPSKEMKNMM KATKKPAAPM SKSPQGFATP RVYKPAPTKT SLSTSHSSLK KEKVSPLLSK KQTAPKSLHI SMNLDPPASD PTALPSTRKS LIMERMGDKD
401: IVKRAFKSFQ KSFDFKSSVD GLNTAVKQNP AKPTIIPSVA TRQKENGRPT KASSMEKRSG TTAYRSPSHG LKSNETAEKQ QKEISKSGAR PLEKTRLQKN
501: PKAGVIDAKT RRDSLNPKAK PVQGSLPMRT VSKSSLDKVL

Arabidopsis Description

F3I6.9 protein [Source:UniProtKB/TrEMBL;Acc:O48683]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.