Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016236.1-P | Field mustard | nucleus | 64.49 | 65.56 |
| CDY38789 | Canola | nucleus | 33.88 | 55.7 |
| AT1G70100.3 | Thale cress | nucleus | 47.14 | 45.83 |
| CDY14672 | Canola | nucleus | 37.76 | 37.3 |
| CDY16238 | Canola | nucleus | 37.14 | 35.97 |
| CDY46410 | Canola | cytosol | 11.84 | 35.58 |
| CDX99631 | Canola | cytosol | 9.39 | 31.72 |
| CDY46409 | Canola | nucleus | 15.31 | 28.52 |
| KRH69438 | Soybean | nucleus | 28.78 | 28.09 |
| VIT_01s0026g00960.t01 | Wine grape | nucleus | 29.18 | 27.88 |
| KRG99221 | Soybean | nucleus | 26.12 | 26.83 |
| KRH33693 | Soybean | nucleus | 11.22 | 25.82 |
| KRG99370 | Soybean | nucleus | 12.45 | 25.21 |
| KRH74704 | Soybean | nucleus | 27.35 | 24.68 |
| PGSC0003DMT400004849 | Potato | nucleus | 22.65 | 24.67 |
| CDX83685 | Canola | nucleus | 12.45 | 24.5 |
| KRH45764 | Soybean | nucleus | 23.88 | 24.27 |
| CDY13707 | Canola | nucleus | 12.04 | 23.23 |
| CDY48358 | Canola | nucleus | 12.86 | 22.58 |
| KRH16191 | Soybean | nucleus | 16.33 | 21.62 |
| CDY34153 | Canola | nucleus | 12.04 | 21.15 |
| CDY42558 | Canola | nucleus | 11.43 | 19.11 |
| CDX72762 | Canola | nucleus | 17.35 | 18.72 |
| CDX67471 | Canola | nucleus | 11.63 | 18.69 |
| CDY25766 | Canola | nucleus | 13.88 | 18.33 |
| CDX91933 | Canola | nucleus | 11.84 | 17.9 |
| CDY11706 | Canola | nucleus | 11.02 | 17.7 |
| CDY36374 | Canola | nucleus | 12.04 | 17.56 |
| CDX96289 | Canola | nucleus | 17.14 | 17.32 |
| Solyc04g005060.2.1 | Tomato | nucleus | 13.06 | 17.11 |
| CDY32377 | Canola | nucleus | 10.2 | 16.95 |
| CDY38790 | Canola | nucleus | 4.69 | 16.55 |
| CDY33408 | Canola | nucleus | 11.84 | 15.59 |
| CDX74313 | Canola | nucleus | 12.45 | 15.25 |
| PGSC0003DMT400058225 | Potato | nucleus | 18.37 | 15.1 |
| Solyc05g006490.2.1 | Tomato | nucleus | 18.16 | 14.78 |
| CDX99732 | Canola | nucleus | 15.31 | 14.04 |
| CDY40987 | Canola | nucleus | 14.49 | 12.35 |
| CDY12493 | Canola | nucleus | 7.55 | 11.82 |
| CDY15926 | Canola | plastid | 5.92 | 11.69 |
Protein Annotations
| EnsemblPlants:CDY11620 | EnsemblPlantsGene:GSBRNA2T00049743001 | ncoils:Coil | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF17 | ProteinID:CDY11620 |
| ProteinID:CDY11620.1 | SEG:seg | UniParc:UPI0004EF3B97 | UniProt:A0A078FB54 | MapMan:35.2 | : |
Description
BnaC06g31190DBnaC06g31190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB54]
Coordinates
chrLK032012:-:525250..527879
Molecular Weight (calculated)
54425.4 Da
IEP (calculated)
9.994
GRAVY (calculated)
-0.895
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDMEVAIAI GEDKIMKANK ETQVSISFGK FENDSLSWEK FSSFSPNKYL EEVEKCATPG SVAQKKAYFE SHYKKIAERN AEIILEQEKK QLERNQSFRQ
101: SLENSGNRNS VMIESSACYG SDGESTSEKD KIVNSIATEV NDTCNHEPLE ETMKVEVVED LNTLKMEKLE EIVSVEEEPE LIVQLEDKEE PEEVVCIEEE
201: VKEDISSKDT PLKETKKVKE QHLIKKTDKR VQAIYTRSSP KPNQLTKKPV ASRKTQLSKE KSMIKATTTT NKAASPSPVS KASKFSTPRV SKPSSSTSSV
301: STSRSSVKKE SVSTLPRKKQ TAPKTLHTSL NLNQPSSDPT ALATTRKSLI MERMGDKEIV RRAFKTFQKN FDQVKPSQDT APKQVPAKAT SVSKLATTGL
401: KDNGRLAKSD GTEKKCSNSH RSSSFVPKSS RTAEKQELSR PGARAVEKTR LPAKPKAEVT NAKTRRQSLD PKAKSMQGDL PKGSSDKLIL
101: SLENSGNRNS VMIESSACYG SDGESTSEKD KIVNSIATEV NDTCNHEPLE ETMKVEVVED LNTLKMEKLE EIVSVEEEPE LIVQLEDKEE PEEVVCIEEE
201: VKEDISSKDT PLKETKKVKE QHLIKKTDKR VQAIYTRSSP KPNQLTKKPV ASRKTQLSKE KSMIKATTTT NKAASPSPVS KASKFSTPRV SKPSSSTSSV
301: STSRSSVKKE SVSTLPRKKQ TAPKTLHTSL NLNQPSSDPT ALATTRKSLI MERMGDKEIV RRAFKTFQKN FDQVKPSQDT APKQVPAKAT SVSKLATTGL
401: KDNGRLAKSD GTEKKCSNSH RSSSFVPKSS RTAEKQELSR PGARAVEKTR LPAKPKAEVT NAKTRRQSLD PKAKSMQGDL PKGSSDKLIL
001: MVDMEVGIAS GEDKITTAAS SNQELQVSVS FGKFENDSLS WEKFSSFSPN KYLEEVEKCA TAGSVAQKKA YFESHYKKIA ERRADIIMEQ EKLLERNASF
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KAEASNVKTR RQSLNPKENP IQGPLPKGYS
501: DKVL
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KAEASNVKTR RQSLNPKENP IQGPLPKGYS
501: DKVL
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryot /.../83 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70100]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.