Factsheet for PGSC0003DMT400058225

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006490.2.1	Tomato	nucleus	42.28	41.86
CDY46410	Canola	cytosol	10.23	37.42
Zm00001d024922_P001	Maize	nucleus	4.87	28.43
KRH33693	Soybean	nucleus	9.73	27.23
CDY38789	Canola	nucleus	11.74	23.49
KRG99370	Soybean	nucleus	9.4	23.14
KRH16191	Soybean	nucleus	13.26	21.35
KRH45764	Soybean	nucleus	15.94	19.71
VIT_01s0026g00960.t01	Wine grape	nucleus	16.78	19.49
Bra024641.1-P	Field mustard	nucleus	16.11	19.01
CDY14672	Canola	nucleus	15.6	18.75
PGSC0003DMT400004849	Potato	nucleus	13.93	18.44
CDY11620	Canola	nucleus	15.1	18.37
KRG99221	Soybean	nucleus	14.6	18.24
KRH74704	Soybean	nucleus	16.44	18.05
AT1G70100.3	Thale cress	nucleus	15.1	17.86
CDY16238	Canola	nucleus	15.1	17.79
Bra016318.1-P	Field mustard	nucleus	14.43	17.62
Bra016236.1-P	Field mustard	nucleus	13.93	17.22
AT1G24160.1	Thale cress	nucleus	15.44	17.04
KRH69438	Soybean	nucleus	14.26	16.93
Zm00001d005523_P001	Maize	cytosol, extracellular, plastid	5.54	15.94
HORVU2Hr1G014490.1	Barley	plastid	4.87	15.85
PGSC0003DMT400017939	Potato	nucleus	12.92	15.52
PGSC0003DMT400032926	Potato	nucleus	12.92	15.07
PGSC0003DMT400031254	Potato	nucleus	15.44	14.26
TraesCS3B01G438400.1	Wheat	nucleus	13.59	14.19
EES06976	Sorghum	nucleus	12.25	13.85
GSMUA_Achr6P18450_001	Banana	nucleus	12.25	13.85
TraesCS3D01G400000.1	Wheat	nucleus	13.26	13.84
GSMUA_Achr6P24150_001	Banana	nucleus	10.4	13.69
GSMUA_Achr6P03270_001	Banana	nucleus	9.4	13.49
Os12t0273700-01	Rice	nucleus	9.06	13.47
EES03998	Sorghum	nucleus	12.42	13.05
TraesCS6D01G153200.1	Wheat	nucleus	12.08	13.02
TraesCS6B01G192000.1	Wheat	nucleus	12.08	13.02
TraesCS6A01G159300.1	Wheat	nucleus	12.08	13.02
GSMUA_Achr7P23570_001	Banana	nucleus	11.58	12.92
Zm00001d016849_P002	Maize	nucleus	11.91	12.75
TraesCS3A01G404700.2	Wheat	nucleus	12.25	12.74
Os01t0885300-01	Rice	nucleus	12.08	12.57
Os02t0558600-01	Rice	nucleus	12.42	12.48
Zm00001d042598_P003	Maize	mitochondrion	13.26	12.29
OQU79091	Sorghum	nucleus	8.22	11.86
TraesCS2D01G087000.1	Wheat	nucleus	9.56	11.8
Zm00001d023630_P005	Maize	nucleus	9.06	11.59
HORVU6Hr1G033310.33	Barley	cytosol	10.91	10.85
PGSC0003DMT400078339	Potato	nucleus	11.91	10.41
Os05t0420500-01	Rice	nucleus	12.42	10.41
Zm00001d038217_P002	Maize	nucleus	12.75	10.08
TraesCS1D01G263300.1	Wheat	nucleus	12.25	9.99
HORVU1Hr1G063930.1	Barley	nucleus	12.08	9.86
TraesCS1A01G263200.1	Wheat	nucleus	11.74	9.59
TraesCS2B01G104800.2	Wheat	nucleus	7.72	9.52
TraesCS1B01G273800.1	Wheat	nucleus	11.58	9.44
TraesCS2A01G089100.1	Wheat	nucleus	4.87	8.79
EES18249	Sorghum	nucleus	11.24	8.74
HORVU2Hr1G014550.1	Barley	cytosol	3.19	3.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400058225	EnsemblPlantsGene:PGSC0003DMG400022609	EntrezGene:102603767	ncoils:Coil	PANTHER:PTHR31358	PANTHER:PTHR31358:SF17
PGSC:PGSC0003DMG400022609	RefSeq:XP_015168815.1	RefSeq:XP_015168816.1	RefSeq:XP_015168817.1	RefSeq:XP_015168818.1	RefSeq:XP_015168819.1
SEG:seg	UniParc:UPI000294F228	UniProt:M1C2A6	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022609]

Coordinates

chr5:+:6681418..6687658

Molecular Weight (calculated)

64712.7 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.799

Length

596 amino acids

Sequence
(BLAST)

001: MGESIVETTA VKHKMGDSVV SHPTLEVSVS FGRFENDALS WEKWSSFSPN KYLEEVEKCS TPGSVAQKKA YFEAHYKRIA AKKLEQLEEE TRQVEQKMEP
101: LCPEVAEPKS GDVTENGTSD GDFSSSKGER SSVDEQQMSV VELKNSDAVD EPKEDITVDV ECDNLLVTKA KELTISGIDE SKDDISVDIE CVSPFATEAK
201: EGTVLGIDES NEDISVDVEC DNLVVTKTKE ETILGTCDQG EFHKVEERNP EKGCQVSVVE TPQANTEAQK ASLKKSKTPN ANVKNVPRKA YTPEARVSVG
301: TKKKLTSPVA KSSRISTPTS KQAPTSKVVT PSQPSAKKVN GMSTQRSNNT PLVQHKKLVP GSFVSPSQSS NKKLNGATLS QSSNKKMNGA TPSQSSNKKL
401: NGATPSQSSN KKLNGAMSSQ SSNKTLNGAA LQRSVNSPVL EDKRVVPTSL HMSLRLSSPN STASTNTMRK SLFMETMGDK DIVKRAFKAF QNSFSQGRSA
501: GDMTYDVQDQ VSSKGSEQKI SLSSTQKESE RLRKTPDKVI TLKGQSTTRS TSSSSGAPKD AGVEKKRVNS IRASTGLRID RSTDKWKEEV TKGKIK

Best Arabidopsis Sequence Match ( AT1G70100.4 )
(BLAST)

001: MVDMEVGIAS GEDKITTAAS SNQELQVSVS FGKFENDSLS WEKFSSFSPN KYLEEVEKCA TAGSVAQKKA YFESHYKKIA ERRADIIMEQ EKLLERNASF
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KKQAMSKLGG KV

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryot /.../83 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70100]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.