Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G400000.1 | Wheat | nucleus | 93.34 | 93.34 |
| TraesCS3A01G404700.2 | Wheat | nucleus | 79.86 | 79.58 |
| Os01t0885300-01 | Rice | nucleus | 46.58 | 46.42 |
| EES03998 | Sorghum | nucleus | 42.03 | 42.33 |
| Zm00001d042598_P003 | Maize | mitochondrion | 36.6 | 32.5 |
| TraesCS1B01G273800.1 | Wheat | nucleus | 35.55 | 27.77 |
| GSMUA_Achr7P23570_001 | Banana | nucleus | 19.96 | 21.35 |
| GSMUA_Achr6P18450_001 | Banana | nucleus | 19.26 | 20.87 |
| VIT_18s0001g05830.t01 | Wine grape | nucleus | 15.76 | 17.24 |
| KRG99370 | Soybean | nucleus | 7.18 | 16.94 |
| KRH33693 | Soybean | nucleus | 6.3 | 16.9 |
| KRH16191 | Soybean | nucleus | 10.68 | 16.49 |
| TraesCS6B01G192000.1 | Wheat | nucleus | 15.24 | 15.73 |
| KRH69438 | Soybean | nucleus | 13.66 | 15.54 |
| KRG99221 | Soybean | nucleus | 12.96 | 15.51 |
| Solyc02g067950.2.1 | Tomato | extracellular | 13.31 | 15.32 |
| KRH45764 | Soybean | nucleus | 12.78 | 15.15 |
| PGSC0003DMT400004849 | Potato | nucleus | 11.91 | 15.11 |
| Solyc02g093720.2.1 | Tomato | nucleus | 13.13 | 14.97 |
| KRH74704 | Soybean | nucleus | 14.19 | 14.92 |
| PGSC0003DMT400032926 | Potato | nucleus | 13.13 | 14.68 |
| Solyc05g006490.2.1 | Tomato | nucleus | 14.71 | 13.95 |
| TraesCS2B01G104800.2 | Wheat | nucleus | 11.73 | 13.87 |
| KRH07049 | Soybean | nucleus | 12.08 | 13.83 |
| PGSC0003DMT400058225 | Potato | nucleus | 14.19 | 13.59 |
| PGSC0003DMT400017939 | Potato | nucleus | 11.73 | 13.51 |
| KRH57609 | Soybean | nucleus | 14.71 | 13.5 |
| KRG94005 | Soybean | nucleus | 14.36 | 12.46 |
| PGSC0003DMT400031254 | Potato | nucleus | 13.31 | 11.78 |
| KRG97481 | Soybean | nucleus | 13.31 | 11.62 |
| Solyc04g005060.2.1 | Tomato | nucleus | 7.53 | 11.5 |
| KRH31410 | Soybean | nucleus | 12.43 | 11.49 |
| Solyc05g014270.2.1 | Tomato | nucleus | 12.78 | 10.96 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G438400.1 | EnsemblPlantsGene:TraesCS3B01G438400 | PANTHER:PTHR31358 | PANTHER:PTHR31358:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr3B:+:677613093..677618702
Molecular Weight (calculated)
61882.8 Da
IEP (calculated)
10.586
GRAVY (calculated)
-0.937
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEVDQTFF AWSQGETTDL GVSEGVSVSQ TLNHGSVSFG RFELESLSWE KWSVFSNDKR HEEFVKFNGL VAQKKAYFEE YYKKIRELKA SQQQIQQTEL
101: TLEYSGDGSD SSQTEDMPHE ELETPTGSGT IVYDYVEEAA HETTSEQGMQ CYHDHEDEDF RNELSSSNLV SEVRISQQTD QDGRENALGD NSDSANVENA
201: GLGHEGIGAA YENARVSRRN AEKDPRLRYA SLIIPKSVKT VAGSTLDRTS VTKTPGSAKP SMTTNQKTKT NNARSSSVAS QKITGATRTR RITEKEAPGV
301: TGVKRPSSAA GRVTSIGEKH PITRATVKKP ADVSTPGRPS SAERRPVTRE RAQKQAAVAT PCRPSTSERR PVDRGSAAKR SGVEGTRRPS TGERRSVTRD
401: SARTPSKTAG SSVAHPKVMT TTVSTLKRPA PLNATTKSTK PEPKSNIRGS KDASTVYSHL TRPARMDLQV AGKQKSSSVN LPARKMLSSS VGEATFARLK
501: KKEGIPATGQ SRGSTSKKTT PLQTANTKSR APNPPAPPPP PRRPSRTTSK PTVSGSSVGG RKPKASTPQW H
101: TLEYSGDGSD SSQTEDMPHE ELETPTGSGT IVYDYVEEAA HETTSEQGMQ CYHDHEDEDF RNELSSSNLV SEVRISQQTD QDGRENALGD NSDSANVENA
201: GLGHEGIGAA YENARVSRRN AEKDPRLRYA SLIIPKSVKT VAGSTLDRTS VTKTPGSAKP SMTTNQKTKT NNARSSSVAS QKITGATRTR RITEKEAPGV
301: TGVKRPSSAA GRVTSIGEKH PITRATVKKP ADVSTPGRPS SAERRPVTRE RAQKQAAVAT PCRPSTSERR PVDRGSAAKR SGVEGTRRPS TGERRSVTRD
401: SARTPSKTAG SSVAHPKVMT TTVSTLKRPA PLNATTKSTK PEPKSNIRGS KDASTVYSHL TRPARMDLQV AGKQKSSSVN LPARKMLSSS VGEATFARLK
501: KKEGIPATGQ SRGSTSKKTT PLQTANTKSR APNPPAPPPP PRRPSRTTSK PTVSGSSVGG RKPKASTPQW H
001: MVDMEVGIAS GEDKITTAAS SNQELQVSVS FGKFENDSLS WEKFSSFSPN KYLEEVEKCA TAGSVAQKKA YFESHYKKIA ERRADIIMEQ EKLLERNASF
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KAEASNVKTR RQSLNPKENP IQGPLPKGYS
501: DKVL
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDPSRLGTRA VERIHLQAKP KAEASNVKTR RQSLNPKENP IQGPLPKGYS
501: DKVL
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryot /.../83 (source: NCBI BLink). [Source:TAIR;Acc:AT1G70100]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.